Sequence Similarity Clusters for the Entities in PDB 6O39

Entity #1 | Chains: A
Antibody F2.I Fab, Light chain protein, length: 213 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 73739
95 % 22 209 79 Flexibility: Low
Max RMSD: 7.7, Avg RMSD: 2.3
PDBFlex
90 % 93 774 2
70 % 271 2373 2
50 % 337 3008 2
40 % 337 3008 2
30 % 696 6105 1
Entity #2 | Chains: B
Antibody F2.I Fab, Heavy chain protein, length: 221 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 73737
95 % 1 1 45244
90 % 40 325 19
70 % 332 2908 1
50 % 353 3053 1
40 % 353 3053 1
30 % 697 6105 1
Entity #3 | Chains: C
Frizzled-5 protein, length: 123 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 73738
95 % 1 1 44348
90 % 1 1 42148
70 % 2 9 3784
50 % 4 11 3384
40 % 4 11 3382
30 % 4 11 3308

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures