Sequence Similarity Clusters for the Entities in PDB 6NOG

Entity #1 | Chains: A,E
Histone H3.2 protein, length: 135 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 62 76 201
95 % 193 230 62
90 % 199 238 64
70 % 202 241 70
50 % 210 250 91
40 % 210 250 106
30 % 210 250 108
Entity #2 | Chains: B,F
Histone H4 protein, length: 102 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 190 233 40
95 % 211 255 39
90 % 218 264 37
70 % 219 263 48
50 % 219 263 85
40 % 219 263 101
30 % 219 263 102
Entity #3 | Chains: C,G
Histone H2A type 1 protein, length: 129 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 94 118 112
95 % 184 234 60
90 % 177 220 69
70 % 182 226 76
50 % 182 226 100
40 % 182 226 118
30 % 182 226 124
Entity #4 | Chains: D,H
Histone H2B 1.1 protein, length: 122 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 9 11 2700
95 % 41 60 429
90 % 182 225 68
70 % 192 236 72
50 % 196 242 95
40 % 196 242 111
30 % 196 242 114
Entity #5 | Chains: L
Ubiquitin protein, length: 80 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 307 383 4
95 % 379 476 6
90 % 388 490 7
70 % 437 540 9
50 % 449 555 11
40 % 449 559 14
30 % 459 575 20
Entity #6 | Chains: K
Histone-lysine N-methyltransferase, H3 lysine-79 specific protein, length: 416 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 12 14 4780
95 % 18 20 3729
90 % 18 20 3812
70 % 18 20 3898
50 % 18 20 3718
40 % 18 20 3708
30 % 18 20 3652
Entity #7 | Chains: I
601 DNA Strand 1 dna, length: 146 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #8 | Chains: J
601 DNA Strand 2 dna, length: 146 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures