Sequence Similarity Clusters for the Entities in PDB 6NKL

Entity #1 | Chains: A,B
Ribonuclease VapC protein, length: 143 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 51343
95 % 1 1 34917 Flexibility: Low
Max RMSD: 1.0, Avg RMSD: 1.0
PDBFlex
90 % 1 1 31734
70 % 1 1 29918
50 % 1 1 26140
40 % 1 1 23828
30 % 5 7 2168
Entity #2 | Chains: C,D
Antitoxin VapB1 protein, length: 96 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 37638
95 % 1 1 34916 Flexibility: Low
Max RMSD: 2.8, Avg RMSD: 2.8
PDBFlex
90 % 1 1 33470
70 % 1 1 28462
50 % 1 1 24895
40 % 1 1 22712
30 % 1 1 21175

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures


ACTION - (A) Select for download / view details OR (B) Select two chains for comparison
Rank PDB ID Entity ID Chains Description Details Taxonomy EC Number
1 6NKL 2 C, D Antitoxin VapB1 Residues (MASMTGG QQMGRDPNSS S) at the N-terminus are from the cloning vector. 727