Sequence Similarity Clusters for the Entities in PDB 6NKL

Entity #1 | Chains: A,B
Ribonuclease VapC protein, length: 143 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 41228
95 % 1 1 32926 Flexibility: Low
Max RMSD: 1.0, Avg RMSD: 1.0
PDBFlex
90 % 1 1 31525
70 % 1 1 29866
50 % 1 1 26075
40 % 1 1 23752
30 % 5 7 2177
Entity #2 | Chains: C,D
Antitoxin VapB1 protein, length: 96 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 38965
95 % 1 1 32923 Flexibility: Low
Max RMSD: 2.8, Avg RMSD: 2.8
PDBFlex
90 % 1 1 33276
70 % 1 1 29865
50 % 1 1 26074
40 % 1 1 22629
30 % 1 1 20180

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures


ACTION - (A) Select for download / view details OR (B) Select two chains for comparison
Rank PDB ID Entity ID Chains Description Details Taxonomy EC Number
1 5ECD 1 A, B tRNA(fMet)-specific endonuclease VapC 623 3.1 | Details
2 5ECW 1 A, B tRNA(fMet)-specific endonuclease VapC 623 3.1 | Details
3 5ECY 1 A, B, C, D, E, F, G, H tRNA(fMet)-specific endonuclease VapC 623 3.1 | Details
4 5ED0 1 A, B, C, D, E, F, G, H, I, J, K, L tRNA(fMet)-specific endonuclease VapC 623 3.1 | Details
5 6NKL 1 A, B Ribonuclease VapC Residues at the C-terminus (LLEHHHHHH) are from the purification tag. VapB-1 727 3.1 | Details
6 3ZVK 1 A, B, C, D TOXIN OF TOXIN-ANTITOXIN SYSTEM 42862
7 3TND 1 A, C, E, G tRNA(fMet)-specific endonuclease VapC 623 3.1 | Details