Sequence Similarity Clusters for the Entities in PDB 6NKL

Entity #1 | Chains: A,B
Ribonuclease VapC protein, length: 143 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 44434
95 % 1 1 34860 Flexibility: Low
Max RMSD: 1.0, Avg RMSD: 1.0
PDBFlex
90 % 1 1 33348
70 % 1 1 29810
50 % 1 1 26097
40 % 1 1 23771
30 % 5 7 2176
Entity #2 | Chains: C,D
Antitoxin VapB1 protein, length: 96 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 39009
95 % 1 1 32945 Flexibility: Low
Max RMSD: 2.8, Avg RMSD: 2.8
PDBFlex
90 % 1 1 31608
70 % 1 1 29809
50 % 1 1 26096
40 % 1 1 23770
30 % 1 1 21131

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures


ACTION - (A) Select for download / view details OR (B) Select two chains for comparison
Rank PDB ID Entity ID Chains Description Details Taxonomy EC Number
1 6NKL 1 A, B Ribonuclease VapC Residues at the C-terminus (LLEHHHHHH) are from the purification tag. VapB-1 727 3.1 | Details