Sequence Similarity Clusters for the Entities in PDB 6NKL

Entity #1 | Chains: A,B
Ribonuclease VapC protein, length: 143 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 40960
95 % 1 1 34592 Flexibility: Low
Max RMSD: 1.0, Avg RMSD: 1.0
PDBFlex
90 % 1 1 33091
70 % 1 1 29666
50 % 1 1 25919
40 % 1 1 23586
30 % 5 7 2159
Entity #2 | Chains: C,D
Antitoxin VapB1 protein, length: 96 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 38727
95 % 1 1 34591 Flexibility: Low
Max RMSD: 2.8, Avg RMSD: 2.8
PDBFlex
90 % 1 1 33090
70 % 1 1 28178
50 % 1 1 24720
40 % 1 1 23585
30 % 1 1 20994

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures