Sequence Similarity Clusters for the Entities in PDB 6NK6

Entity #1 | Chains: M,N,O,P
Matrix remodeling-associated protein 8 protein, length: 269 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 4 8615
95 % 3 4 9147
90 % 3 4 9073
70 % 4 5 6535
50 % 4 5 6250
40 % 4 5 6068
30 % 4 5 5775
Entity #2 | Chains: A,B,C,D
E1 glycoprotein protein, length: 439 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 2 9303
95 % 2 4 4716
90 % 7 10 2695
70 % 7 10 2755
50 % 7 11 2369
40 % 7 11 2384
30 % 7 11 2370
Entity #3 | Chains: E,F,G,H
E2 glycoprotein protein, length: 419 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 2 9302
95 % 2 2 9793
90 % 2 4 4823
70 % 2 4 4782
50 % 2 4 4650
40 % 2 13 1391
30 % 2 13 1392
Entity #4 | Chains: I,J,K,L
Capsid protein protein, length: 151 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 4 3977
95 % 3 6 3317
90 % 5 9 2259
70 % 5 9 2327
50 % 21 27 1049
40 % 21 27 1081
30 % 21 27 1113

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures