Sequence Similarity Clusters for the Entities in PDB 6N6D

Entity #1 | Chains: A
Oligoribonuclease protein, length: 181 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 7 12656
95 % 2 7 12924 Flexibility: No
Max RMSD: 0.2, Avg RMSD: 0.1
PDBFlex
90 % 2 7 12757
70 % 2 7 12099
50 % 5 27 1360
40 % 5 27 1410
30 % 5 27 1443
Entity #2 | Chains: D
RNA (5'-R(P*AP*G)-3') rna, length: 2 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures


ACTION - (A) Select for download / view details OR (B) Select two chains for comparison
Rank PDB ID Entity ID Chains Description Details Taxonomy EC Number
1 6N6J 1 A, B RNA exonuclease 2 homolog,Small fragment nuclease 9606 3.1 | Details
2 6N6K 1 A, B RNA exonuclease 2 homolog,Small fragment nuclease 9606 3.1 | Details
3 6N6I 1 A, B RNA exonuclease 2 homolog,Small fragment nuclease 9606 3.1 | Details
4 6N6A 1 A Oligoribonuclease 666 3.1 | Details
5 6N6D 1 A Oligoribonuclease 666 3.1 | Details
6 6N6E 1 A RNA exonuclease 2 homolog,Small fragment nuclease 666 3.1 | Details
7 6N6C 1 A RNA exonuclease 2 homolog,Small fragment nuclease 666 3.1 | Details
8 6N6F 1 A Oligoribonuclease 666 3.1 | Details
9 2IGI 1 A, B Oligoribonuclease 562 3.1 | Details
10 6N6H 1 A Oligoribonuclease 666 3.1 | Details
11 6J80 1 A, B Oligoribonuclease, mitochondrial 9606 3.1 | Details
12 6N6G 1 A Oligoribonuclease 666 3.1 | Details
13 6RCL 1 A, B Oligoribonuclease, mitochondrial 9606 3.1 | Details
14 6RCI 1 A, B Oligoribonuclease, mitochondrial 9606 3.1 | Details
15 6J7Z 1 A, B Oligoribonuclease, mitochondrial 9606 3.1 | Details
16 5CY4 1 A, B, C, D, E, F Oligoribonuclease 470 3.1 | Details
17 6A4F 1 A, B Oligoribonuclease 28229 3.1 | Details
18 6J7Y 1 A, B Oligoribonuclease, mitochondrial 9606 3.1 | Details
19 6A4D 1 A, B Oligoribonuclease 28229 3.1 | Details
20 1YTA 1 A, B, C, D Oligoribonuclease 562 3.1 | Details
21 2GBZ 1 A Oligoribonuclease 339 3.1 | Details
22 6RCN 1 A, B Oligoribonuclease, mitochondrial 9606 3.1 | Details
23 1J9A 1 A OLIGORIBONUCLEASE 727 3.1 | Details
24 3TR8 1 A, B Oligoribonuclease 777 3.1 | Details
25 6A4E 1 A, C Oligoribonuclease 28229 3.1 | Details
26 6A4A 1 A Oligoribonuclease 28229 3.1 | Details
27 6RK6 1 A, B, C Oligoribonuclease 256318 3.1.13.3 | Details