Sequence Similarity Clusters for the Entities in PDB 6MZE

Entity #1 | Chains: A,C,H,J,O,Q,V,X
Tubulin alpha-1A chain protein, length: 451 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 10 2040
95 % 126 248 12 Flexibility: Low
Max RMSD: 3.4, Avg RMSD: 1.0
PDBFlex
90 % 126 249 15
70 % 128 263 21
50 % 128 263 43
40 % 256 526 8
30 % 262 534 11
Entity #2 | Chains: B,D,I,K,P,R,W,Y
Tubulin beta chain protein, length: 445 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 8 57 109
95 % 127 245 13 Flexibility: Low
Max RMSD: 3.2, Avg RMSD: 0.7
PDBFlex
90 % 127 255 13
70 % 129 263 20
50 % 129 263 41
40 % 257 526 8
30 % 263 534 11
Entity #3 | Chains: E,L,S,Z
Protein Stu2p/Alp14p protein, length: 536 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 25700
95 % 1 1 23350 Flexibility: Low
Max RMSD: 1.3, Avg RMSD: 0.9
PDBFlex
90 % 2 3 8734
70 % 2 3 8505
50 % 2 3 8001
40 % 2 3 7705
30 % 2 3 7196
Entity #4 | Chains: F,G,M,N,T,U,a,b
Designed ankyrin repeat protein (DARPIN) D1 protein, length: 169 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 7 9 2446
95 % 11 13 2452 Flexibility: Low
Max RMSD: 1.5, Avg RMSD: 0.5
PDBFlex
90 % 13 16 2202
70 % 92 100 265
50 % 103 111 226
40 % 104 112 240
30 % 113 123 235

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures