Sequence Similarity Clusters for the Entities in PDB 6MZD

Entity #1 | Chains: A
Transcription initiation factor TFIID subunit 1 protein, length: 1873 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 2 40001
95 % 1 3 29611
90 % 1 3 28519
70 % 1 3 25776
50 % 1 3 22671
40 % 1 3 20717
30 % 1 3 18548
Entity #10 | Chains: S
Transcription initiation factor TFIID subunit 13 protein, length: 124 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 2 37144
95 % 1 2 37843
90 % 1 2 35538
70 % 1 2 31668
50 % 1 2 28019
40 % 1 2 25475
30 % 1 2 22614
Entity #11 | Chains: T
TATA-box-binding protein protein, length: 339 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 13 5533
95 % 2 13 6387
90 % 2 13 6399
70 % 2 13 6316
50 % 2 13 6067
40 % 2 13 5897
30 % 2 13 5613
Entity #12 | Chains: Y
poly(UNK) protein, length: 96 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #2 | Chains: C
Transcription initiation factor TFIID subunit 3 protein, length: 929 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 2 57176
95 % 1 2 42729
90 % 1 2 40648
70 % 1 2 35982
50 % 1 2 31201
40 % 1 2 28269
30 % 1 2 25014
Entity #3 | Chains: D
Transcription initiation factor TFIID subunit 4 protein, length: 1085 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 4 19078
95 % 2 4 17761
90 % 2 4 16506
70 % 2 4 15456
50 % 2 4 14684
40 % 2 4 13659
30 % 2 4 12444
Entity #4 | Chains: F
Transcription initiation factor TFIID subunit 5 protein, length: 800 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 4 17970
95 % 2 4 17703
90 % 2 4 17373
70 % 2 4 16663
50 % 2 4 15035
40 % 2 4 13981
30 % 2 4 12723
Entity #5 | Chains: H
Transcription initiation factor TFIID subunit 6 protein, length: 677 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 5 17267
95 % 3 8 9844
90 % 3 8 9776
70 % 3 8 9465
50 % 3 8 8636
40 % 3 8 8390
30 % 3 8 7726
Entity #6 | Chains: L
Transcription initiation factor TFIID subunit 9 protein, length: 264 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 4 19599
95 % 2 4 18210
90 % 2 4 17859
70 % 2 4 16614
50 % 2 4 14986
40 % 2 4 13940
30 % 2 4 12689
Entity #7 | Chains: N
Transcription initiation factor TFIID subunit 10 protein, length: 218 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 4 17871
95 % 2 4 16726
90 % 2 4 16415
70 % 2 4 15356
50 % 2 4 13890
40 % 2 4 12916
30 % 2 4 11774
Entity #8 | Chains: P
Transcription initiation factor TFIID subunit 11 protein, length: 211 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 2 49363
95 % 1 2 39318
90 % 1 2 37433
70 % 1 2 33274
50 % 1 2 28971
40 % 1 2 26313
30 % 1 2 23334
Entity #9 | Chains: Q
Transcription initiation factor TFIID subunit 12 protein, length: 161 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 4 19080
95 % 2 4 17762
90 % 2 4 16436
70 % 2 4 16268
50 % 2 4 14685
40 % 2 4 13660
30 % 2 4 12445

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures