Sequence Similarity Clusters for the Entities in PDB 6MUV

Entity #1 | Chains: A,O
20S proteasome alpha-1 subunit protein, length: 260 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 4 11813
95 % 1 4 11187
90 % 1 4 11101
70 % 1 4 10336
50 % 1 4 9823
40 % 312 368 41
30 % 1914 2279 2
Entity #10 | Chains: J,X
20S proteasome beta-3 subunit protein, length: 218 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 4 10408
95 % 1 4 11719
90 % 1 4 11589
70 % 1 4 10809
50 % 1 4 10186
40 % 312 364 45
30 % 312 364 47
Entity #11 | Chains: K,Y
20S proteasome beta-4 subunit protein, length: 195 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 4 10388
95 % 1 4 11769
90 % 1 4 11644
70 % 1 4 11124
50 % 1 4 10226
40 % 309 361 48
30 % 311 363 49
Entity #12 | Chains: L,Z
20S proteasome beta-5 subunit protein, length: 211 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 4 12228
95 % 1 4 12425
90 % 1 4 11716
70 % 1 4 11669
50 % 297 316 63
40 % 297 316 80
30 % 307 339 30
Entity #13 | Chains: M,a
20S proteasome beta-6 subunit protein, length: 240 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 4 10409
95 % 1 4 11274
90 % 1 4 11194
70 % 1 4 10688
50 % 1 4 9882
40 % 1 4 9406
30 % 1 4 8733
Entity #14 | Chains: N,b
20S proteasome beta-7 subunit protein, length: 265 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 4 10597
95 % 1 4 10830
90 % 1 4 10732
70 % 1 4 10960
50 % 1 4 10091
40 % 1 4 9584
30 % 1 4 8876
Entity #15 | Chains: c,d,e,f,g,h,i,j,k,l,m,n,o,p
Proteasome activator PA28 protein, length: 279 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 3 1564
95 % 2 3 2014
90 % 2 3 2069
70 % 2 3 2121
50 % 2 3 2171
40 % 2 3 2213
30 % 2 3 2228
Entity #2 | Chains: B,P
20S proteasome alpha-2 subunit protein, length: 235 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 4 11525
95 % 1 4 10708
90 % 1 4 10394
70 % 1 4 10223
50 % 23 56 600
40 % 312 367 42
30 % 1915 2279 2
Entity #3 | Chains: C,Q
20S proteasome alpha-3 subunit protein, length: 246 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 4 11959
95 % 1 4 12158
90 % 1 4 12009
70 % 1 4 10807
50 % 310 365 36
40 % 312 367 43
30 % 1916 2279 2
Entity #4 | Chains: D,R
20S proteasome alpha-4 subunit protein, length: 241 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 4 11906
95 % 1 4 11327
90 % 1 4 11240
70 % 1 4 10730
50 % 1 4 9915
40 % 323 394 18
30 % 1917 2279 2
Entity #5 | Chains: E,S
20S proteasome alpha-5 subunit protein, length: 256 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 4 11527
95 % 1 4 11610
90 % 1 4 10620
70 % 1 4 10226
50 % 311 366 35
40 % 311 366 44
30 % 1918 2279 2
Entity #6 | Chains: F,T
20S proteasome alpha-6 subunit protein, length: 254 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 4 11526
95 % 1 4 10490
90 % 1 4 11482
70 % 1 4 10225
50 % 1 4 9506
40 % 1 4 9602
30 % 1919 2279 2
Entity #7 | Chains: G,U
20S proteasome alpha-7 subunit protein, length: 252 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 4 12068
95 % 1 4 10709
90 % 1 4 11479
70 % 1 4 10224
50 % 1 4 9326
40 % 1 4 9599
30 % 1920 2279 2
Entity #8 | Chains: H,V
20S proteasome beta-1 subunit protein, length: 252 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 4 11524
95 % 1 4 10707
90 % 1 4 11475
70 % 1 4 10222
50 % 1 4 9505
40 % 1 4 9075
30 % 1 4 8433
Entity #9 | Chains: I,W
20S proteasome beta-2 subunit protein, length: 229 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 4 11958
95 % 1 4 11415
90 % 1 4 11309
70 % 1 4 11440
50 % 308 339 53
40 % 308 339 69
30 % 308 339 71

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures