Sequence Similarity Clusters for the Entities in PDB 6KIX

Entity #1 | Chains: A,E
Histone H3 protein, length: 135 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 54 76 201
95 % 171 230 62
90 % 177 238 64
70 % 180 241 70
50 % 188 250 91
40 % 188 250 106
30 % 188 250 108
Entity #10 | Chains: T
Set1/Ash2 histone methyltransferase complex subunit ASH2 protein, length: 534 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 4 5 18710
95 % 4 5 17425
90 % 4 5 17090
70 % 4 5 15990
50 % 4 5 14427
40 % 4 5 13416
30 % 4 5 12219
Entity #2 | Chains: B,F
Histone H4 protein, length: 102 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 168 233 40
95 % 189 255 39
90 % 196 264 37
70 % 197 263 48
50 % 197 263 85
40 % 197 263 101
30 % 197 263 102
Entity #3 | Chains: C,G
Histone H2A protein, length: 129 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 82 118 112
95 % 162 234 60
90 % 158 220 69
70 % 163 226 76
50 % 163 226 100
40 % 163 226 118
30 % 163 226 124
Entity #4 | Chains: D,H
Histone H2B 1.1 protein, length: 122 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 4 11 2700
95 % 31 60 429
90 % 162 225 68
70 % 172 236 72
50 % 176 242 95
40 % 176 242 111
30 % 176 242 114
Entity #5 | Chains: I
DNA (145-MER) dna, length: 145 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #6 | Chains: J
DNA (145-MER) dna, length: 145 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #7 | Chains: N
Retinoblastoma-binding protein 5 protein, length: 538 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 4 5 17899
95 % 4 5 17182
90 % 4 5 16854
70 % 4 5 15780
50 % 4 5 14238
40 % 4 5 13239
30 % 4 5 12058
Entity #8 | Chains: K
Histone-lysine N-methyltransferase 2A protein, length: 216 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 4 20950
95 % 3 4 19183
90 % 3 4 18761
70 % 3 4 20715
50 % 3 4 15620
40 % 3 4 14498
30 % 3 4 13158
Entity #9 | Chains: R
WD repeat-containing protein 5 protein, length: 334 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 64 65 370
95 % 74 75 422
90 % 76 77 430
70 % 76 77 472
50 % 76 77 505
40 % 76 77 536
30 % 76 77 561

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures