Sequence Similarity Clusters for the Entities in PDB 6JGX

Entity #1 | Chains: A,B
CadR protein, length: 147 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 4 4895
95 % 2 4 5786 Flexibility: Medium
Max RMSD: 7.8, Avg RMSD: 3.4
PDBFlex
90 % 2 4 5716
70 % 2 4 5932
50 % 2 4 5535
40 % 2 4 5551
30 % 2 4 5321
Entity #2 | Chains: C
DNA (5'-D(*CP*AP*CP*CP*CP*TP*AP*TP*AP*GP*TP*GP*GP*CP*TP*AP*CP*AP*GP*GP*GP*T)-3') dna, length: 22 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #3 | Chains: D
DNA (5'-D(*GP*AP*CP*CP*CP*TP*GP*TP*AP*GP*CP*CP*AP*CP*TP*AP*TP*AP*GP*GP*GP*T)-3') dna, length: 22 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures


ACTION - (A) Select for download / view details OR (B) Select two chains for comparison
Rank PDB ID Entity ID Chains Description Details Taxonomy EC Number
1 6JGV 1 A, B CadR 303
2 6JGX 1 A, B CadR 303
3 6JGW 1 A, B CadR 303
4 6JNI 1 A, B, C, D, E, F, G, H CadR 303