Sequence Similarity Clusters for the Entities in PDB 6J71

Entity #1 | Chains: A
Receptor tyrosine-protein kinase erbB-2 protein, length: 618 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 5 15 3760
95 % 6 16 4412 Flexibility: Low
Max RMSD: 3.9, Avg RMSD: 1.5
PDBFlex
90 % 6 16 4494
70 % 6 14 5258
50 % 6 14 5074
40 % 15 38 1332
30 % 15 38 1349
Entity #2 | Chains: B
anti-HER2 humanized antibody HuA21 protein, length: 254 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 77121
95 % 1 1 56824
90 % 1 1 51819
70 % 3 3 15906
50 % 29 42 778
40 % 30 43 807
30 % 4189 6095 1

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures