Sequence Similarity Clusters for the Entities in PDB 6J51

Entity #1 | Chains: A
DNA-directed RNA polymerase subunit protein, length: 1743 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 10 19 3066
95 % 10 19 3801
90 % 10 19 3865
70 % 125 151 354
50 % 126 153 407
40 % 126 153 435
30 % 126 153 452
Entity #10 | Chains: J
RNA polymerase subunit ABC10-beta, common to RNA polymerases I, II, and III protein, length: 72 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 10 19 3016
95 % 10 19 3689
90 % 10 19 3754
70 % 140 221 230
50 % 140 221 249
40 % 140 221 262
30 % 140 221 279
Entity #11 | Chains: K
RNA polymerase II subunit B12.5 protein, length: 118 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 10 19 2973
95 % 10 19 3778
90 % 10 19 3844
70 % 10 19 3843
50 % 125 153 416
40 % 126 155 430
30 % 126 155 449
Entity #12 | Chains: L
RNA polymerase subunit ABC10-alpha protein, length: 72 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 7 16 4437
95 % 10 19 3712
90 % 10 19 3874
70 % 10 19 3861
50 % 136 200 307
40 % 136 200 323
30 % 136 200 344
Entity #13 | Chains: P
RNA (5'-R(P*CP*CP*UP*GP*GP*UP*GP*UP*CP*UP*UP*GP*GP*GP*UP*G)-3') rna, length: 16 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #14 | Chains: T
DNA (198-MER) dna, length: 198 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #15 | Chains: N
DNA (198-MER) dna, length: 198 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #16 | Chains: M
Transcription elongation factor 1 homolog protein, length: 113 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 4 5 18585
95 % 4 5 17874
90 % 4 5 17538
70 % 4 5 16352
50 % 4 5 14742
40 % 4 5 13692
30 % 4 5 12479
Entity #17 | Chains: V
Transcription elongation factor SPT4 protein, length: 108 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 6 8 11598
95 % 6 8 10934
90 % 6 8 10821
70 % 6 8 10419
50 % 6 8 9655
40 % 6 8 9203
30 % 6 8 8544
Entity #18 | Chains: W
Protein that forms a complex with Spt4p protein, length: 911 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 6 7 13322
95 % 6 7 12871
90 % 6 7 12704
70 % 6 7 12067
50 % 6 7 11020
40 % 6 7 10365
30 % 6 7 9578
Entity #19 | Chains: a,e
Histone H3.3 protein, length: 139 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 17 25 1057
95 % 220 250 42
90 % 226 258 43
70 % 229 261 51
50 % 238 271 79
40 % 238 271 95
30 % 238 271 95
Entity #2 | Chains: B
DNA-directed RNA polymerase subunit beta protein, length: 1227 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 10 19 3079
95 % 10 19 3817
90 % 10 19 3884
70 % 126 155 343
50 % 127 170 372
40 % 135 178 363
30 % 136 194 352
Entity #20 | Chains: b,f
Histone H4 protein, length: 106 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 217 253 23
95 % 238 275 34
90 % 245 284 36
70 % 246 283 46
50 % 246 283 76
40 % 246 283 92
30 % 246 283 92
Entity #21 | Chains: c,g
Histone H2A type 1-B/E protein, length: 133 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 78 90 180
95 % 212 255 38
90 % 202 238 66
70 % 214 253 54
50 % 221 260 85
40 % 221 260 100
30 % 221 260 100
Entity #22 | Chains: d,h
Histone H2B type 1-J protein, length: 129 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 76 89 182
95 % 154 172 105
90 % 212 248 53
70 % 222 259 53
50 % 227 266 82
40 % 227 266 99
30 % 227 266 99
Entity #23 | Chains: 0
DNA (36-MER) dna, length: 36 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #24 | Chains: 1
DNA (36-MER) dna, length: 36 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #3 | Chains: C
RNA polymerase II third largest subunit B44, part of central core protein, length: 304 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 10 19 2995
95 % 10 19 3816
90 % 10 19 3883
70 % 10 19 3865
50 % 10 19 3803
40 % 10 19 3801
30 % 10 19 3713
Entity #4 | Chains: D
RNA polymerase II subunit B32 protein, length: 186 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 10 19 3064
95 % 10 19 3669
90 % 10 19 3734
70 % 10 19 3854
50 % 10 19 3664
40 % 11 21 3460
30 % 11 21 3352
Entity #5 | Chains: E
RNA polymerase subunit ABC27, common to RNA polymerases I, II, and III protein, length: 214 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 10 19 3039
95 % 10 19 3736
90 % 10 19 3886
70 % 139 205 262
50 % 140 207 289
40 % 141 222 258
30 % 141 222 273
Entity #6 | Chains: F
RNA polymerase subunit ABC23, common to RNA polymerases I, II, and III protein, length: 155 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 10 19 2924
95 % 10 19 3660
90 % 10 19 3726
70 % 10 19 3715
50 % 137 201 301
40 % 137 201 319
30 % 137 201 340
Entity #7 | Chains: G
RNA polymerase II subunit protein, length: 171 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 10 19 3028
95 % 10 19 3746
90 % 10 19 3814
70 % 10 19 3812
50 % 68 110 531
40 % 68 110 570
30 % 68 110 591
Entity #8 | Chains: H
DNA-directed RNA polymerases I, II, and III subunit RPABC3 protein, length: 145 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 10 19 2994
95 % 10 19 3815
90 % 10 19 3882
70 % 10 19 3864
50 % 138 205 296
40 % 138 205 310
30 % 139 221 286
Entity #9 | Chains: I
DNA-directed RNA polymerase subunit protein, length: 115 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 10 19 3019
95 % 10 19 3694
90 % 10 19 3759
70 % 124 152 351
50 % 125 154 404
40 % 125 154 432
30 % 126 170 406

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures