Sequence Similarity Clusters for the Entities in PDB 6J2X

Entity #1 | Chains: 1,b
Proteasome subunit beta type-1 protein, length: 215 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 283 306 12
95 % 283 306 22
90 % 283 306 23
70 % 283 306 32
50 % 283 306 58
40 % 283 306 74
30 % 283 306 78
Entity #10 | Chains: C,d
Proteasome subunit alpha type-3 protein, length: 258 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 283 309 8
95 % 283 309 17
90 % 283 309 20
70 % 283 309 29
50 % 300 357 34
40 % 302 359 40
30 % 1854 2228 2
Entity #11 | Chains: D,n
Proteasome subunit alpha type-4 protein, length: 254 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 283 309 9
95 % 283 309 20
90 % 283 309 22
70 % 283 309 27
50 % 302 359 33
40 % 313 386 18
30 % 1855 2228 2
Entity #12 | Chains: E,m
Proteasome subunit alpha type-5 protein, length: 260 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 282 308 11
95 % 283 309 21
90 % 284 310 17
70 % 284 310 26
50 % 301 358 32
40 % 301 358 42
30 % 1856 2228 2
Entity #13 | Chains: F,l
Proteasome subunit alpha type-6 protein, length: 234 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 281 307 15
95 % 283 309 16
90 % 283 309 19
70 % 283 309 28
50 % 283 309 57
40 % 283 309 73
30 % 1857 2228 2
Entity #14 | Chains: G,k
Probable proteasome subunit alpha type-7 protein, length: 288 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 247 264 22
95 % 247 264 34
90 % 247 264 39
70 % 247 264 48
50 % 247 264 83
40 % 247 264 96
30 % 247 264 100
Entity #15 | Chains: H
26S proteasome regulatory subunit 7 homolog protein, length: 467 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 24 2287
95 % 1 24 2896
90 % 1 24 2951
70 % 1 49 1257
50 % 1 49 1293
40 % 1 49 1339
30 % 1 49 1371
Entity #16 | Chains: I
26S PROTEASE REGULATORY SUBUNIT 4 HOMOLOG protein, length: 437 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 18 3270
95 % 1 18 3962
90 % 1 18 4188
70 % 1 39 1594
50 % 1 39 1634
40 % 1 39 1681
30 % 1 39 1712
Entity #17 | Chains: J
26S proteasome regulatory subunit 8 homolog protein, length: 405 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 24 2231
95 % 1 24 2803
90 % 1 24 3038
70 % 1 55 1097
50 % 1 77 528
40 % 1 147 337
30 % 1 147 350
Entity #18 | Chains: K
26S proteasome regulatory subunit 6B homolog protein, length: 428 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 24 2164
95 % 1 24 2772
90 % 1 24 2830
70 % 1 24 2869
50 % 1 55 1139
40 % 1 55 1177
30 % 1 101 616
Entity #19 | Chains: L
26S proteasome subunit RPT4 protein, length: 437 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 18 3320
95 % 1 18 4037
90 % 1 18 4107
70 % 1 18 4084
50 % 1 49 1295
40 % 2 147 337
30 % 2 147 350
Entity #2 | Chains: 2,i
Proteasome subunit beta type-2 protein, length: 261 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 7 24 1073
95 % 262 285 30
90 % 273 296 29
70 % 273 296 38
50 % 300 333 39
40 % 300 333 48
30 % 300 333 50
Entity #20 | Chains: M
26S proteasome regulatory subunit 6A protein, length: 434 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 24 2200
95 % 1 24 2807
90 % 1 24 2859
70 % 1 33 2083
50 % 1 46 1376
40 % 1 46 1426
30 % 2 101 616
Entity #21 | Chains: N
26S proteasome regulatory subunit RPN2 protein, length: 945 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 24 2148
95 % 2 24 2731
90 % 2 24 2796
70 % 2 24 2833
50 % 2 24 2850
40 % 2 56 1144
30 % 2 56 1182
Entity #22 | Chains: O
26S proteasome regulatory subunit RPN9 protein, length: 393 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 25 2088
95 % 1 25 2672
90 % 1 25 2736
70 % 1 25 2773
50 % 1 25 2786
40 % 1 25 2795
30 % 1 57 1177
Entity #23 | Chains: P
26S PROTEASOME REGULATORY SUBUNIT RPN5 protein, length: 445 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 24 2201
95 % 1 24 2952
90 % 1 24 3005
70 % 1 24 3027
50 % 1 24 2904
40 % 1 56 1158
30 % 1 56 1200
Entity #24 | Chains: Q
26S proteasome regulatory subunit RPN6 protein, length: 434 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 24 2353
95 % 1 24 2966
90 % 1 24 2999
70 % 1 24 3002
50 % 1 24 3032
40 % 1 24 3006
30 % 1 24 2963
Entity #25 | Chains: R
26S proteasome regulatory subunit RPN7 protein, length: 429 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 24 2216
95 % 1 24 2816
90 % 1 24 2997
70 % 1 24 2903
50 % 1 24 2917
40 % 1 24 2927
30 % 1 56 1206
Entity #26 | Chains: S
26S proteasome regulatory subunit RPN3 protein, length: 523 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 23 2457
95 % 1 23 3078
90 % 1 23 3141
70 % 1 23 3146
50 % 1 23 3117
40 % 1 23 3098
30 % 1 23 3044
Entity #27 | Chains: T
26S proteasome regulatory subunit RPN12 protein, length: 274 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 24 2286
95 % 1 24 2895
90 % 1 24 2950
70 % 1 24 2978
50 % 1 24 2981
40 % 1 24 2978
30 % 1 35 1972
Entity #28 | Chains: U
26S proteasome regulatory subunit RPN8 protein, length: 338 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 19 3108
95 % 2 19 3869
90 % 2 19 3939
70 % 2 19 3932
50 % 2 19 3852
40 % 2 40 1617
30 % 2 40 1639
Entity #29 | Chains: V
Ubiquitin carboxyl-terminal hydrolase RPN11 protein, length: 306 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 25 2110
95 % 1 25 2697
90 % 1 25 2764
70 % 1 25 2813
50 % 1 57 1099
40 % 1 57 1139
30 % 1 57 1176
Entity #3 | Chains: 3,h
Proteasome subunit beta type-3 protein, length: 205 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 283 306 13
95 % 283 306 23
90 % 283 306 24
70 % 283 306 33
50 % 300 353 36
40 % 302 356 43
30 % 302 356 42
Entity #30 | Chains: W
26S proteasome regulatory subunit RPN10 protein, length: 268 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 17 3618
95 % 1 17 4418
90 % 1 17 4478
70 % 1 17 4426
50 % 1 17 4322
40 % 1 17 4218
30 % 1 17 4120
Entity #31 | Chains: X
26S proteasome regulatory subunit RPN13 protein, length: 156 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 17 3607
95 % 1 17 4464
90 % 1 17 4361
70 % 1 17 4357
50 % 1 17 4209
40 % 1 17 4117
30 % 1 17 4018
Entity #32 | Chains: Y
26S proteasome complex subunit SEM1 protein, length: 89 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 4 28 1750
95 % 4 28 2302
90 % 4 28 2363
70 % 4 28 2398
50 % 4 28 2422
40 % 4 28 2453
30 % 4 28 2431
Entity #33 | Chains: Z
26S proteasome regulatory subunit RPN1 protein, length: 993 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 23 2510
95 % 1 23 3143
90 % 1 23 3206
70 % 1 23 3217
50 % 1 23 3189
40 % 1 53 1228
30 % 1 53 1263
Entity #4 | Chains: 4,g
Proteasome subunit beta type-4 protein, length: 198 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 282 305 16
95 % 282 305 26
90 % 282 305 27
70 % 282 305 36
50 % 282 305 61
40 % 299 353 45
30 % 301 355 45
Entity #5 | Chains: 5,f
Proteasome subunit beta type-5 protein, length: 287 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 7 20 1220
95 % 7 24 1445
90 % 7 24 1475
70 % 7 24 1520
50 % 7 24 1551
40 % 7 24 1605
30 % 7 24 1627
Entity #6 | Chains: 6,e
PROTEASOME COMPONENT C5 protein, length: 241 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 250 273 18
95 % 283 306 24
90 % 283 306 25
70 % 283 306 34
50 % 283 306 59
40 % 283 327 63
30 % 283 327 66
Entity #7 | Chains: 7,a
Proteasome subunit beta type-7 protein, length: 266 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 283 306 14
95 % 283 306 25
90 % 283 306 26
70 % 283 306 35
50 % 283 306 60
40 % 283 306 75
30 % 283 306 79
Entity #8 | Chains: A,c
Proteasome subunit alpha type-1 protein, length: 252 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 283 309 7
95 % 283 309 19
90 % 283 309 18
70 % 283 309 31
50 % 300 357 35
40 % 302 360 39
30 % 1858 2228 2
Entity #9 | Chains: B,j
Proteasome subunit alpha type-2 protein, length: 250 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 283 309 10
95 % 283 309 18
90 % 283 309 21
70 % 283 309 30
50 % 302 359 31
40 % 302 359 41
30 % 1859 2228 2

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures