Sequence Similarity Clusters for the Entities in PDB 6IYC

Entity #1 | Chains: A
Nicastrin protein, length: 709 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 7 13392
95 % 1 7 13076
90 % 1 7 12888
70 % 1 7 12233
50 % 1 7 11190
40 % 1 7 10531
30 % 1 7 9707
Entity #2 | Chains: B
Presenilin-1 protein, length: 467 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 85169
95 % 1 7 13116
90 % 1 7 13252
70 % 1 7 12580
50 % 1 7 11507
40 % 1 7 10569
30 % 1 7 9744
Entity #3 | Chains: C
Gamma-secretase subunit APH-1A protein, length: 265 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 7 13098
95 % 1 7 12509
90 % 1 7 12318
70 % 1 7 12133
50 % 1 7 11089
40 % 1 7 10422
30 % 1 7 9622
Entity #4 | Chains: D
Gamma-secretase subunit PEN-2 protein, length: 101 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 7 12800
95 % 1 7 13014
90 % 1 7 12819
70 % 1 7 12178
50 % 1 7 11132
40 % 1 7 10469
30 % 1 7 9662
Entity #5 | Chains: E
Amyloid-beta A4 protein protein, length: 104 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 85167
95 % 1 1 57382
90 % 1 1 54117
70 % 1 1 47137
50 % 1 1 40728
40 % 1 1 36855
30 % 1 1 32464

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures


ACTION - (A) Select for download / view details OR (B) Select two chains for comparison
Rank PDB ID Entity ID Chains Description Details Taxonomy EC Number
1 6IYC 4 D Gamma-secretase subunit PEN-2 9606
2 6IDF 4 D Gamma-secretase subunit PEN-2 9606
3 5FN2 4 D Gamma-secretase subunit PEN-2 A DRUG DAPT WAS BOUND TO GAMMA SECRETASE COMPLEX 9606
4 5FN3 4 D Gamma-secretase subunit PEN-2 9606
5 5FN4 4 D Gamma-secretase subunit PEN-2 9606
6 5FN5 4 D Gamma-secretase subunit PEN-2 A DRUG DAPT WAS BOUND TO GAMMA SECRETASE COMPLEX 9606
7 5A63 4 D Gamma-secretase subunit PEN-2 9606