Sequence Similarity Clusters for the Entities in PDB 6IYC

Entity #1 | Chains: A
Nicastrin protein, length: 709 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 7 13333
95 % 1 7 13029
90 % 1 7 12857
70 % 1 7 12168
50 % 1 7 11133
40 % 1 7 10468
30 % 1 7 9672
Entity #2 | Chains: B
Presenilin-1 protein, length: 467 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 85086
95 % 1 7 12951
90 % 1 7 12773
70 % 1 7 12109
50 % 1 7 11083
40 % 1 7 10415
30 % 1 7 9623
Entity #3 | Chains: C
Gamma-secretase subunit APH-1A protein, length: 265 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 7 12773
95 % 1 7 13003
90 % 1 7 12826
70 % 1 7 12144
50 % 1 7 11111
40 % 1 7 10448
30 % 1 7 9650
Entity #4 | Chains: D
Gamma-secretase subunit PEN-2 protein, length: 101 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 7 13354
95 % 1 7 13208
90 % 1 7 12894
70 % 1 7 12198
50 % 1 7 11166
40 % 1 7 10499
30 % 1 7 9693
Entity #5 | Chains: E
Amyloid-beta A4 protein protein, length: 104 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 85085
95 % 1 1 57323
90 % 1 1 54043
70 % 1 1 47076
50 % 1 1 40675
40 % 1 1 36753
30 % 1 1 32388

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures


ACTION - (A) Select for download / view details OR (B) Select two chains for comparison
Rank PDB ID Entity ID Chains Description Details Taxonomy EC Number
1 6IYC 4 D Gamma-secretase subunit PEN-2 9606
2 6IDF 4 D Gamma-secretase subunit PEN-2 9606
3 5FN2 4 D Gamma-secretase subunit PEN-2 A DRUG DAPT WAS BOUND TO GAMMA SECRETASE COMPLEX 9606
4 5FN3 4 D Gamma-secretase subunit PEN-2 9606
5 5FN4 4 D Gamma-secretase subunit PEN-2 9606
6 5FN5 4 D Gamma-secretase subunit PEN-2 A DRUG DAPT WAS BOUND TO GAMMA SECRETASE COMPLEX 9606
7 5A63 4 D Gamma-secretase subunit PEN-2 9606