Sequence Similarity Clusters for the Entities in PDB 6IYC

Entity #1 | Chains: A
Nicastrin protein, length: 709 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 7 12789
95 % 1 7 12997
90 % 1 7 12798
70 % 1 7 12150
50 % 1 7 11107
40 % 1 7 10450
30 % 1 7 9657
Entity #2 | Chains: B
Presenilin-1 protein, length: 467 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 84967
95 % 1 7 13058
90 % 1 7 12866
70 % 1 7 12213
50 % 1 7 11175
40 % 1 7 10513
30 % 1 7 9705
Entity #3 | Chains: C
Gamma-secretase subunit APH-1A protein, length: 265 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 7 13303
95 % 1 7 12945
90 % 1 7 12751
70 % 1 7 12097
50 % 1 7 11066
40 % 1 7 10404
30 % 1 7 9618
Entity #4 | Chains: D
Gamma-secretase subunit PEN-2 protein, length: 101 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 7 12788
95 % 1 7 12996
90 % 1 7 12797
70 % 1 7 12149
50 % 1 7 11106
40 % 1 7 10449
30 % 1 7 9656
Entity #5 | Chains: E
Amyloid-beta A4 protein protein, length: 104 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 84966
95 % 1 1 51366
90 % 1 1 49328
70 % 1 1 43213
50 % 1 1 40615
40 % 1 1 33775
30 % 1 1 29816

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures


ACTION - (A) Select for download / view details OR (B) Select two chains for comparison
Rank PDB ID Entity ID Chains Description Details Taxonomy EC Number
1 6IYC 3 C Gamma-secretase subunit APH-1A 9606
2 6IDF 3 C Gamma-secretase subunit APH-1A 9606
3 5FN2 3 C Gamma-secretase subunit APH-1A A DRUG DAPT WAS BOUND TO GAMMA SECRETASE COMPLEX 9606
4 5FN3 3 C Gamma-secretase subunit APH-1A 9606
5 5FN4 3 C Gamma-secretase subunit APH-1A 9606
6 5FN5 3 C Gamma-secretase subunit APH-1A A DRUG DAPT WAS BOUND TO GAMMA SECRETASE COMPLEX 9606
7 5A63 3 C Gamma-secretase subunit APH-1A 9606