Sequence Similarity Clusters for the Entities in PDB 6IYC

Entity #1 | Chains: A
Nicastrin protein, length: 709 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 7 12622
95 % 1 7 13030
90 % 1 7 12552
70 % 1 7 12206
50 % 1 7 11158
40 % 1 7 10265
30 % 1 7 9719
Entity #2 | Chains: B
Presenilin-1 protein, length: 467 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 84288
95 % 1 7 12726
90 % 1 7 12517
70 % 1 7 11901
50 % 1 7 11159
40 % 1 7 10513
30 % 1 7 9720
Entity #3 | Chains: C
Gamma-secretase subunit APH-1A protein, length: 265 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 7 12671
95 % 1 7 12805
90 % 1 7 12358
70 % 1 7 11910
50 % 1 7 10969
40 % 1 7 10320
30 % 1 7 9551
Entity #4 | Chains: D
Gamma-secretase subunit PEN-2 protein, length: 101 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 7 13225
95 % 1 7 12868
90 % 1 7 12703
70 % 1 7 12071
50 % 1 7 11023
40 % 1 7 10384
30 % 1 7 9604
Entity #5 | Chains: E
Amyloid-beta A4 protein protein, length: 104 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 84287
95 % 1 1 56783
90 % 1 1 48930
70 % 1 1 46722
50 % 1 1 37061
40 % 1 1 36473
30 % 1 1 32138

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures