Sequence Similarity Clusters for the Entities in PDB 6IR9

Entity #1 | Chains: A
DNA-directed RNA polymerase subunit protein, length: 1743 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 11 19 2728
95 % 11 19 3409
90 % 11 19 3473
70 % 126 150 331
50 % 127 152 387
40 % 127 152 405
30 % 127 152 418
Entity #10 | Chains: J
RNA polymerase subunit ABC10-beta, common to RNA polymerases I, II, and III protein, length: 72 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 11 19 2739
95 % 11 19 3427
90 % 11 19 3532
70 % 132 210 198
50 % 132 210 220
40 % 132 210 240
30 % 132 210 254
Entity #11 | Chains: K
RNA polymerase II subunit B12.5 protein, length: 118 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 11 19 2754
95 % 11 19 3444
90 % 11 19 3504
70 % 11 19 3509
50 % 126 152 389
40 % 127 154 400
30 % 127 154 410
Entity #12 | Chains: L
RNA polymerase subunit ABC10-alpha protein, length: 72 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 8 16 4069
95 % 11 19 3454
90 % 11 19 3408
70 % 11 19 3528
50 % 129 191 257
40 % 129 191 270
30 % 129 191 286
Entity #13 | Chains: P
RNA (5'-R(P*GP*CP*CP*UP*GP*GP*UP*GP*UP*CP*UP*UP*GP*GP*GP*U)-3') rna, length: 16 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #14 | Chains: T
DNA (198-MER) dna, length: 198 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #15 | Chains: N
DNA (198-MER) dna, length: 198 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #16 | Chains: M
Transcription elongation factor 1 homolog protein, length: 113 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 5 5 17498
95 % 5 5 16580
90 % 5 5 16339
70 % 5 5 15305
50 % 5 5 13799
40 % 5 5 12844
30 % 5 5 11681
Entity #17 | Chains: V
Transcription elongation factor SPT4 protein, length: 108 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 7 8 11001
95 % 7 8 11095
90 % 7 8 10974
70 % 7 8 10524
50 % 7 8 9669
40 % 7 8 9165
30 % 7 8 8495
Entity #18 | Chains: W
Spt5 protein, length: 911 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 7 7 12514
95 % 7 7 12424
90 % 7 7 12295
70 % 7 7 11703
50 % 7 7 10725
40 % 7 7 10104
30 % 7 7 9331
Entity #19 | Chains: a,e
Histone H3.3 protein, length: 139 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 15 22 1146
95 % 181 203 66
90 % 187 211 67
70 % 190 214 74
50 % 193 218 96
40 % 193 218 114
30 % 193 218 123
Entity #2 | Chains: B
DNA-directed RNA polymerase subunit beta protein, length: 1227 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 11 19 2748
95 % 11 19 3396
90 % 11 19 3404
70 % 127 154 319
50 % 127 167 346
40 % 135 175 323
30 % 135 190 287
Entity #20 | Chains: b,f
Histone H4 protein, length: 106 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 173 198 47
95 % 192 217 58
90 % 199 226 63
70 % 200 227 70
50 % 200 227 92
40 % 200 227 108
30 % 200 227 117
Entity #21 | Chains: c,g
Histone H2A type 1-B/E protein, length: 133 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 68 77 190
95 % 172 202 64
90 % 164 191 78
70 % 167 194 84
50 % 167 194 106
40 % 167 194 130
30 % 167 194 142
Entity #22 | Chains: d,h
Histone H2B type 1-J protein, length: 129 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 63 73 197
95 % 124 139 127
90 % 167 195 76
70 % 175 203 80
50 % 179 209 99
40 % 179 209 118
30 % 179 209 128
Entity #3 | Chains: C
RNA polymerase II third largest subunit B44, part of central core protein, length: 304 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 11 19 2698
95 % 11 19 3443
90 % 11 19 3448
70 % 11 19 3439
50 % 11 19 3452
40 % 11 19 3373
30 % 11 19 3305
Entity #4 | Chains: D
RNA polymerase II subunit B32 protein, length: 186 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 11 19 2730
95 % 11 19 3410
90 % 11 19 3474
70 % 11 19 3475
50 % 11 19 3432
40 % 12 21 3175
30 % 12 21 3079
Entity #5 | Chains: E
RNA polymerase subunit ABC27, common to RNA polymerases I, II, and III protein, length: 214 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 11 19 2716
95 % 11 19 3440
90 % 11 19 3500
70 % 132 196 238
50 % 133 198 243
40 % 133 211 237
30 % 133 211 251
Entity #6 | Chains: F
RNA polymerase subunit ABC23, common to RNA polymerases I, II, and III protein, length: 155 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 11 19 2729
95 % 11 19 3386
90 % 11 19 3452
70 % 11 19 3474
50 % 130 192 253
40 % 130 192 266
30 % 130 192 283
Entity #7 | Chains: G
RNA polymerase II subunit protein, length: 171 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 11 19 2784
95 % 11 19 3408
90 % 11 19 3543
70 % 11 19 3473
50 % 69 108 490
40 % 69 108 527
30 % 69 108 548
Entity #8 | Chains: H
DNA-directed RNA polymerases I, II, and III subunit RPABC3 protein, length: 145 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 11 19 2676
95 % 11 19 3364
90 % 11 19 3426
70 % 11 19 3421
50 % 131 196 248
40 % 131 196 258
30 % 131 210 255
Entity #9 | Chains: I
DNA-directed RNA polymerase subunit protein, length: 115 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 11 19 2701
95 % 11 19 3439
90 % 11 19 3465
70 % 125 151 327
50 % 126 153 383
40 % 126 153 403
30 % 126 168 380

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures