Sequence Similarity Clusters for the Entities in PDB 6ID1

Entity #1 | Chains: A
Pre-mRNA-processing-splicing factor 8 protein, length: 2335 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 6 18 3711
95 % 6 18 4312
90 % 6 18 4358
70 % 6 19 4158
50 % 10 41 1735
40 % 10 41 1780
30 % 10 41 1804
Entity #10 | Chains: O
Pre-mRNA-splicing factor RBM22 protein, length: 420 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 10 7542
95 % 3 10 8273
90 % 3 10 8147
70 % 3 10 7926
50 % 3 10 7459
40 % 3 10 7187
30 % 3 10 6745
Entity #11 | Chains: P
Spliceosome-associated protein CWC15 homolog protein, length: 229 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 4 12 6422
95 % 4 12 7647
90 % 4 12 7607
70 % 4 12 7436
50 % 4 12 6999
40 % 4 12 6753
30 % 4 12 6350
Entity #12 | Chains: R
SNW domain-containing protein 1 protein, length: 536 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 8 12468
95 % 3 11 8195
90 % 3 11 8133
70 % 3 11 7908
50 % 3 11 7445
40 % 3 12 6824
30 % 3 12 6403
Entity #13 | Chains: S
Peptidyl-prolyl cis-trans isomerase-like 1 protein, length: 166 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 5 13 5706
95 % 5 13 6510
90 % 5 13 6529
70 % 5 13 6442
50 % 5 13 6158
40 % 5 13 5979
30 % 5 13 5697
Entity #14 | Chains: T
Pleiotropic regulator 1 protein, length: 514 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 10 7543
95 % 3 11 7761
90 % 3 11 7721
70 % 3 11 7528
50 % 3 11 7084
40 % 3 11 6831
30 % 3 11 6409
Entity #15 | Chains: W
Pre-mRNA-processing factor 17 protein, length: 579 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 10 8048
95 % 3 10 9203
90 % 3 10 9123
70 % 3 10 8860
50 % 3 10 8253
40 % 4 12 6345
30 % 4 12 6016
Entity #16 | Chains: G
pre-mRNA rna, length: 272 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #17 | Chains: H
U2snRNA rna, length: 188 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #18 | Chains: U
CWF19-like protein 2 protein, length: 894 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 2 50895
95 % 2 2 40635
90 % 2 2 38756
70 % 2 2 34361
50 % 2 2 25424
40 % 2 2 27108
30 % 2 2 23989
Entity #19 | Chains: a,h
Small nuclear ribonucleoprotein Sm D3 protein, length: 126 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 8 19 876
95 % 8 20 1108
90 % 8 20 1139
70 % 8 20 1163
50 % 8 20 1191
40 % 8 20 1233
30 % 8 20 1278
Entity #2 | Chains: B
U5snRNA rna, length: 117 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #20 | Chains: b,i
Small nuclear ribonucleoprotein-associated protein protein, length: 231 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 6 17 1327
95 % 6 17 1731
90 % 6 17 1757
70 % 6 17 1804
50 % 6 17 1856
40 % 6 17 1890
30 % 6 17 1916
Entity #21 | Chains: c,j
Small nuclear ribonucleoprotein Sm D1 protein, length: 119 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 11 23 553
95 % 11 23 753
90 % 11 23 782
70 % 11 24 791
50 % 11 24 823
40 % 11 24 862
30 % 11 24 897
Entity #22 | Chains: d,k
Small nuclear ribonucleoprotein Sm D2 protein, length: 118 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 16 28 484
95 % 18 30 634
90 % 18 30 664
70 % 18 30 697
50 % 25 58 450
40 % 25 58 467
30 % 25 58 490
Entity #23 | Chains: f,m
Small nuclear ribonucleoprotein F protein, length: 86 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 15 27 516
95 % 15 27 698
90 % 15 27 725
70 % 15 27 765
50 % 15 27 795
40 % 15 27 841
30 % 15 27 878
Entity #24 | Chains: e,l
Small nuclear ribonucleoprotein E protein, length: 92 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 16 28 489
95 % 16 28 662
90 % 16 28 694
70 % 16 28 725
50 % 16 28 757
40 % 16 28 789
30 % 16 28 836
Entity #25 | Chains: g,n
Small nuclear ribonucleoprotein G protein, length: 76 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 16 28 486
95 % 16 28 656
90 % 16 28 689
70 % 16 28 720
50 % 23 56 461
40 % 23 57 478
30 % 23 57 502
Entity #26 | Chains: q,r,s,t
Pre-mRNA-processing factor 19 protein, length: 504 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 4 10 1294
95 % 4 10 1718
90 % 4 10 1745
70 % 4 10 1785
50 % 4 10 1834
40 % 4 10 1869
30 % 4 11 1693
Entity #27 | Chains: K
Pre-mRNA-splicing factor SPF27 protein, length: 225 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 4 10 8471
95 % 4 10 8870
90 % 4 10 8783
70 % 4 10 8544
50 % 4 10 7973
40 % 4 10 7669
30 % 4 10 7169
Entity #28 | Chains: I
Pre-mRNA-splicing factor SYF1 protein, length: 855 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 4 10 8098
95 % 4 10 9276
90 % 4 10 9191
70 % 4 10 8929
50 % 4 10 8310
40 % 4 10 7981
30 % 4 10 7455
Entity #29 | Chains: Q
RNA helicase aquarius protein, length: 1485 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 5 11 7283
95 % 5 11 8086
90 % 5 11 8017
70 % 5 11 7820
50 % 5 11 7354
40 % 5 11 7090
30 % 5 11 6658
Entity #3 | Chains: C
116 kDa U5 small nuclear ribonucleoprotein component protein, length: 972 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 15 4784
95 % 6 18 4431
90 % 6 18 4475
70 % 6 18 4570
50 % 6 19 4169
40 % 6 19 4056
30 % 10 41 1817
Entity #30 | Chains: y
Peptidyl-prolyl cis-trans isomerase E protein, length: 301 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 8 11665
95 % 3 8 11664
90 % 3 8 11517
70 % 3 8 11015
50 % 3 8 9782
40 % 3 8 9291
30 % 3 8 8869
Entity #31 | Chains: o
U2 small nuclear ribonucleoprotein A' protein, length: 255 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 4 11 7519
95 % 4 14 6178
90 % 4 14 6192
70 % 4 14 5920
50 % 4 14 5696
40 % 4 14 5555
30 % 4 14 5286
Entity #32 | Chains: p
U2 small nuclear ribonucleoprotein B'' protein, length: 225 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 4 14 5018
95 % 4 14 6112
90 % 4 14 6252
70 % 4 14 6037
50 % 4 14 5792
40 % 4 14 5637
30 % 4 14 5463
Entity #33 | Chains: V
Pre-mRNA-splicing factor ATP-dependent RNA helicase DHX15 protein, length: 795 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 88167
95 % 1 1 61005
90 % 1 1 53202
70 % 1 1 43783
50 % 1 1 43073
40 % 1 1 34193
30 % 1 1 30201
Entity #4 | Chains: E
U5 small nuclear ribonucleoprotein 40 kDa protein protein, length: 357 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 5 16 4488
95 % 5 16 5256
90 % 5 16 5306
70 % 5 16 5248
50 % 5 16 5067
40 % 5 16 4931
30 % 5 16 4747
Entity #5 | Chains: F
U6snRNA rna, length: 107 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #6 | Chains: J
Crooked neck-like protein 1 protein, length: 848 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 4 12 6146
95 % 4 12 7212
90 % 4 12 7201
70 % 4 12 7050
50 % 4 12 6697
40 % 4 12 6464
30 % 4 12 6128
Entity #7 | Chains: L
Cell division cycle 5-like protein protein, length: 802 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 4 12 6830
95 % 4 12 6818
90 % 4 12 7214
70 % 4 12 6716
50 % 4 12 6712
40 % 4 12 6479
30 % 4 12 6139
Entity #8 | Chains: M
Pre-mRNA-splicing factor SYF2 protein, length: 243 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 6 16591
95 % 3 6 15871
90 % 3 6 15589
70 % 3 6 13715
50 % 3 6 12491
40 % 3 6 11686
30 % 3 6 10720
Entity #9 | Chains: N
Protein BUD31 homolog protein, length: 144 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 4 11 7421
95 % 4 11 7930
90 % 4 11 7877
70 % 4 11 7674
50 % 8 29 2598
40 % 8 29 2608
30 % 8 29 2597

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures