Sequence Similarity Clusters for the Entities in PDB 6I1K

Entity #1 | Chains: A
CRISPR-associated endonuclease Cas12a protein, length: 1302 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 2 16792
95 % 3 10 5570 Flexibility: Medium
Max RMSD: 12.7, Avg RMSD: 7.6
PDBFlex
90 % 3 10 5604
70 % 3 10 5524
50 % 3 10 5347
40 % 8 16 3365
30 % 11 20 2784
Entity #2 | Chains: B
crRNA (40-MER) rna, length: 40 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #3 | Chains: C
DNA target strand (38-MER) dna, length: 38 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #4 | Chains: D
DNA non-target strand (33-MER) dna, length: 38 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures