Sequence Similarity Clusters for the Entities in PDB 6HMA

Entity #1 | Chains: A
23S ribosomal RNA rna, length: 2923 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #10 | Chains: J
50S ribosomal protein L15 protein, length: 146 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 12 21 2869
95 % 12 21 3534
90 % 12 21 3601
70 % 16 31 2263
50 % 197 242 117
40 % 293 460 65
30 % 293 460 65
Entity #11 | Chains: K
50S ribosomal protein L16 protein, length: 137 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 12 21 2873
95 % 12 21 3549
90 % 12 21 3616
70 % 13 27 2713
50 % 293 463 52
40 % 293 463 63
30 % 293 463 63
Entity #12 | Chains: L
50S ribosomal protein L17 protein, length: 120 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 12 21 2878
95 % 12 21 3557
90 % 12 21 3621
70 % 16 32 2209
50 % 16 32 2215
40 % 298 462 56
30 % 298 464 56
Entity #13 | Chains: M
50S ribosomal protein L18 protein, length: 119 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 12 21 2771
95 % 12 21 3496
90 % 12 21 3560
70 % 15 30 2403
50 % 279 445 59
40 % 279 445 75
30 % 279 445 76
Entity #14 | Chains: N
50S ribosomal protein L19 protein, length: 116 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 12 21 2808
95 % 12 21 3381
90 % 12 21 3457
70 % 16 32 2199
50 % 93 242 179
40 % 93 242 193
30 % 93 242 204
Entity #15 | Chains: O
50S ribosomal protein L20 protein, length: 116 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 12 21 2746
95 % 12 21 3416
90 % 12 21 3492
70 % 16 32 2234
50 % 298 465 47
40 % 298 473 54
30 % 298 473 55
Entity #16 | Chains: P
50S ribosomal protein L21 protein, length: 102 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 12 21 2877
95 % 12 21 3556
90 % 12 21 3620
70 % 16 31 2349
50 % 225 260 110
40 % 297 460 66
30 % 297 460 66
Entity #17 | Chains: Q
50S ribosomal protein L22 protein, length: 112 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 8 17 3491
95 % 12 21 3448
90 % 12 21 3584
70 % 16 31 2248
50 % 276 434 60
40 % 276 434 76
30 % 276 434 77
Entity #18 | Chains: R
50S ribosomal protein L23 protein, length: 89 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 12 20 2902
95 % 12 21 3401
90 % 12 21 3480
70 % 12 21 3483
50 % 16 32 2241
40 % 295 466 59
30 % 295 466 60
Entity #19 | Chains: S
50S ribosomal protein L24 protein, length: 103 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 12 21 2735
95 % 12 21 3391
90 % 12 21 3468
70 % 16 31 2252
50 % 269 438 58
40 % 269 438 74
30 % 269 440 75
Entity #2 | Chains: B
5S ribosomal RNA rna, length: 115 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #20 | Chains: T
50S ribosomal protein L25 protein, length: 94 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 5 9 8421
95 % 5 9 8442
90 % 5 9 8310
70 % 5 9 8081
50 % 5 9 7587
40 % 5 9 7328
30 % 6 10 6453
Entity #21 | Chains: U
50S ribosomal protein L27 protein, length: 79 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 12 21 2774
95 % 12 21 3511
90 % 15 28 2532
70 % 14 27 2607
50 % 299 462 49
40 % 299 462 61
30 % 299 462 61
Entity #22 | Chains: V
50S ribosomal protein L28 protein, length: 49 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 3 34769
95 % 3 3 27405
90 % 3 3 26554
70 % 3 3 23828
50 % 3 3 21202
40 % 3 3 19151
30 % 3 3 17183
Entity #23 | Chains: W
50S ribosomal protein L29 protein, length: 67 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 12 21 2796
95 % 12 21 3418
90 % 12 21 3494
70 % 16 31 2334
50 % 16 40 1713
40 % 16 40 1764
30 % 16 40 1813
Entity #24 | Chains: X
50S ribosomal protein L30 protein, length: 58 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 12 21 2838
95 % 12 21 3459
90 % 12 21 3526
70 % 15 29 2492
50 % 111 248 176
40 % 297 455 68
30 % 297 455 69
Entity #25 | Chains: Z
50S ribosomal protein L32 protein, length: 48 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 5 11 6364
95 % 5 11 7523
90 % 5 11 7493
70 % 5 11 7335
50 % 16 31 2362
40 % 16 32 2292
30 % 88 223 222
Entity #26 | Chains: 1
50S ribosomal protein L33 protein, length: 47 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 5 8 8656
95 % 5 8 9386
90 % 5 8 9299
70 % 6 18 4132
50 % 168 206 143
40 % 262 421 81
30 % 262 421 84
Entity #27 | Chains: 2
50S ribosomal protein L34 protein, length: 43 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 12 21 2777
95 % 12 21 3522
90 % 12 21 3585
70 % 16 31 2339
50 % 297 459 54
40 % 297 459 67
30 % 297 459 67
Entity #28 | Chains: 3
50S ribosomal protein L35 protein, length: 64 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 12 21 2793
95 % 12 21 3421
90 % 12 21 3497
70 % 13 26 2765
50 % 81 208 206
40 % 81 208 221
30 % 81 208 234
Entity #29 | Chains: 4
50S ribosomal protein L36 protein, length: 37 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 9 18 3476
95 % 9 18 4193
90 % 10 23 3326
70 % 160 211 135
50 % 232 399 80
40 % 232 399 95
30 % 232 399 92
Entity #3 | Chains: C
50S ribosomal protein L2 protein, length: 274 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 12 21 2733
95 % 12 21 3383
90 % 12 21 3491
70 % 16 32 2182
50 % 294 465 50
40 % 294 465 62
30 % 294 465 62
Entity #4 | Chains: D
50S ribosomal protein L3 protein, length: 215 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 12 20 3014
95 % 12 21 3481
90 % 12 21 3543
70 % 12 21 3546
50 % 303 471 51
40 % 303 475 57
30 % 303 476 57
Entity #5 | Chains: E
50S ribosomal protein L4 protein, length: 206 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 12 19 3077
95 % 12 21 3382
90 % 12 21 3458
70 % 12 21 3470
50 % 16 32 2212
40 % 89 226 205
30 % 300 457 70
Entity #6 | Chains: F
50S ribosomal protein L5 protein, length: 158 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 68889
95 % 1 1 55937
90 % 1 1 52775
70 % 1 1 46129
50 % 1 1 39810
40 % 1 1 36010
30 % 1 1 31695
Entity #7 | Chains: G
50S ribosomal protein L6 protein, length: 175 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 12 18 3427
95 % 12 19 3921
90 % 12 19 3997
70 % 12 19 3816
50 % 91 234 187
40 % 294 466 60
30 % 294 466 59
Entity #8 | Chains: H
50S ribosomal protein L13 protein, length: 145 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 12 21 2760
95 % 12 21 3457
90 % 12 21 3524
70 % 12 21 3527
50 % 88 236 186
40 % 271 438 73
30 % 271 438 74
Entity #9 | Chains: I
50S ribosomal protein L14 protein, length: 122 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 12 21 2809
95 % 12 21 3409
90 % 16 31 2294
70 % 21 51 1322
50 % 298 478 46
40 % 298 478 52
30 % 298 478 52

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures