Sequence Similarity Clusters for the Entities in PDB 6H6H

Entity #1 | Chains: A,D
H-2D cell surface glycoprotein protein, length: 338 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 47007
95 % 7 8 3178 Flexibility: Low
Max RMSD: 1.6, Avg RMSD: 0.8
PDBFlex
90 % 7 8 3272
70 % 10 13 2382
50 % 12 17 1988
40 % 12 17 2040
30 % 12 17 2066
Entity #2 | Chains: B,E
Beta-2-microglobulin protein, length: 99 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 79 144 111
95 % 136 273 69 Flexibility: Low
Max RMSD: 1.8, Avg RMSD: 0.6
PDBFlex
90 % 136 273 74
70 % 657 1080 4
50 % 671 1104 4
40 % 671 1104 5
30 % 671 1104 8
Entity #3 | Chains: C,F
SER-GLY-PRO-SER-ASN-THR-PRO-PRO-GLU-ILE protein, length: 10 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures