Sequence Similarity Clusters for the Entities in PDB 6GLC

Entity #1 | Chains: A
E3 ubiquitin-protein ligase parkin protein, length: 389 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 63053
95 % 1 1 49002
90 % 1 1 46486
70 % 1 1 40850
50 % 1 1 35326
40 % 1 1 31941
30 % 1 1 28219
Entity #2 | Chains: B
Polyubiquitin-B protein, length: 76 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 64 387 4
95 % 82 485 6 Flexibility: Low
Max RMSD: 12.4, Avg RMSD: 1.4
PDBFlex
90 % 86 498 6
70 % 95 548 9
50 % 96 563 11
40 % 96 567 14
30 % 99 583 20

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures