Sequence Similarity Clusters for the Entities in PDB 6GH1

Entity #1 | Chains: A,C,E,G
MHC class I antigen protein, length: 274 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 5 4247
95 % 1 16 1557 Flexibility: Low
Max RMSD: 1.9, Avg RMSD: 1.0
PDBFlex
90 % 1 16 1584
70 % 382 832 6
50 % 385 846 7
40 % 403 892 8
30 % 404 917 13
Entity #2 | Chains: B,D,F,H
Beta-2-microglobulin protein, length: 100 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 351 727 2
95 % 382 776 3 Flexibility: Low
Max RMSD: 22.2, Avg RMSD: 0.9
PDBFlex
90 % 389 794 4
70 % 466 1098 4
50 % 473 1122 3
40 % 473 1122 3
30 % 473 1122 9
Entity #3 | Chains: P,Q,R,Z
Enoyl-[acyl-carrier-protein] reductase [NADH] protein, length: 9 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures