Sequence Similarity Clusters for the Entities in PDB 6GC8

Entity #1 | Chains: A
23S ribosomal RNA rna, length: 2904 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #10 | Chains: K
50S ribosomal protein L14 protein, length: 122 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 65 176 122
95 % 65 176 165
90 % 65 176 176
70 % 65 176 196
50 % 287 445 44
40 % 287 445 52
30 % 287 445 53
Entity #11 | Chains: L
50S ribosomal protein L15 protein, length: 143 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 65 175 127
95 % 65 175 168
90 % 65 175 178
70 % 65 175 201
50 % 65 175 223
40 % 282 427 61
30 % 282 427 63
Entity #12 | Chains: M
50S ribosomal protein L16 protein, length: 136 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 54 163 161
95 % 62 171 184
90 % 62 171 195
70 % 62 171 217
50 % 282 433 48
40 % 282 433 56
30 % 282 433 58
Entity #13 | Chains: N
50S ribosomal protein L17 protein, length: 120 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 64 171 137
95 % 65 174 173
90 % 65 174 184
70 % 65 174 207
50 % 274 398 57
40 % 286 429 54
30 % 286 431 56
Entity #14 | Chains: O
50S ribosomal protein L18 protein, length: 116 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 63 172 135
95 % 63 172 180
90 % 63 172 190
70 % 63 172 212
50 % 267 413 59
40 % 267 413 73
30 % 267 413 78
Entity #15 | Chains: P
50S ribosomal protein L19 protein, length: 114 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 65 174 129
95 % 65 174 172
90 % 65 174 183
70 % 65 174 206
50 % 84 215 191
40 % 84 215 202
30 % 84 215 210
Entity #16 | Chains: Q
50S ribosomal protein L20 protein, length: 117 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 65 175 125
95 % 65 175 166
90 % 65 175 179
70 % 65 175 198
50 % 287 432 47
40 % 287 440 53
30 % 287 440 54
Entity #17 | Chains: R
50S ribosomal protein L21 protein, length: 103 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 65 171 138
95 % 65 171 183
90 % 65 171 194
70 % 65 171 213
50 % 65 171 228
40 % 286 427 63
30 % 286 427 65
Entity #18 | Chains: S
50S ribosomal protein L22 protein, length: 110 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 65 174 130
95 % 65 174 174
90 % 65 174 185
70 % 65 174 208
50 % 263 401 61
40 % 263 401 75
30 % 263 401 79
Entity #19 | Chains: T
50S ribosomal protein L23 protein, length: 93 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 65 178 120
95 % 65 178 159
90 % 65 178 171
70 % 65 178 192
50 % 65 178 219
40 % 65 178 235
30 % 65 178 249
Entity #2 | Chains: B
5S ribosomal RNA rna, length: 119 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #20 | Chains: U
50S ribosomal protein L24 protein, length: 102 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 65 177 121
95 % 65 177 162
90 % 65 177 172
70 % 65 177 193
50 % 258 405 60
40 % 258 407 70
30 % 258 407 76
Entity #21 | Chains: V
50S ribosomal protein L25 protein, length: 94 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 64 178 119
95 % 64 178 156
90 % 64 178 168
70 % 64 178 189
50 % 65 179 211
40 % 65 179 224
30 % 65 179 234
Entity #22 | Chains: W
50S ribosomal protein L27 protein, length: 76 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 64 173 134
95 % 64 174 177
90 % 64 174 188
70 % 93 203 168
50 % 287 430 49
40 % 287 430 57
30 % 287 430 59
Entity #23 | Chains: X
50S ribosomal protein L28 protein, length: 77 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 59 158 160
95 % 59 158 212
90 % 59 158 224
70 % 59 158 244
50 % 61 160 250
40 % 61 160 263
30 % 61 160 275
Entity #24 | Chains: Y
50S ribosomal protein L29 protein, length: 63 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 65 178 118
95 % 65 178 155
90 % 65 178 170
70 % 65 178 191
50 % 65 178 218
40 % 238 366 89
30 % 264 392 82
Entity #25 | Chains: Z
50S ribosomal protein L30 protein, length: 58 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 65 175 124
95 % 65 175 167
90 % 65 175 181
70 % 65 175 199
50 % 101 222 182
40 % 285 423 64
30 % 285 423 66
Entity #26 | Chains: 0
50S ribosomal protein L32 protein, length: 56 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 65 172 133
95 % 65 172 178
90 % 65 172 189
70 % 65 172 211
50 % 65 172 227
40 % 77 196 217
30 % 285 419 71
Entity #27 | Chains: 1
50S ribosomal protein L33 protein, length: 50 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 62 171 139
95 % 62 171 182
90 % 62 171 193
70 % 62 171 215
50 % 86 196 200
40 % 251 391 84
30 % 251 391 86
Entity #28 | Chains: 2
50S ribosomal protein L34 protein, length: 46 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 65 170 140
95 % 65 170 185
90 % 65 170 198
70 % 93 199 169
50 % 276 409 55
40 % 276 409 68
30 % 276 409 74
Entity #29 | Chains: 3
50S ribosomal protein L35 protein, length: 64 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 62 167 142
95 % 62 167 189
90 % 62 167 203
70 % 62 167 223
50 % 74 188 208
40 % 284 421 66
30 % 284 421 68
Entity #3 | Chains: C
50S ribosomal protein L2 protein, length: 271 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 63 171 136
95 % 63 171 181
90 % 63 171 192
70 % 63 171 214
50 % 281 432 50
40 % 281 432 58
30 % 281 432 60
Entity #4 | Chains: D
50S ribosomal protein L3 protein, length: 209 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 72 183 123
95 % 72 183 163
90 % 72 183 174
70 % 72 183 195
50 % 292 438 51
40 % 292 442 55
30 % 292 443 57
Entity #5 | Chains: E
50S ribosomal protein L4 protein, length: 201 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 65 174 131
95 % 65 174 175
90 % 65 174 186
70 % 65 174 209
50 % 65 174 224
40 % 287 423 65
30 % 287 424 67
Entity #6 | Chains: F
50S ribosomal protein L5 protein, length: 177 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 66 178 128
95 % 66 178 170
90 % 66 178 182
70 % 66 178 203
50 % 284 429 52
40 % 284 429 59
30 % 284 429 61
Entity #7 | Chains: G
50S ribosomal protein L6 protein, length: 176 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 64 173 132
95 % 64 173 176
90 % 64 173 187
70 % 64 173 210
50 % 64 173 225
40 % 81 219 203
30 % 282 439 55
Entity #8 | Chains: H
50S ribosomal protein L9 protein, length: 54 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 5 11 3594
95 % 5 11 4479
90 % 5 11 4536
70 % 5 11 4335
50 % 11 17 2470
40 % 14 21 2042
30 % 14 21 2053
Entity #9 | Chains: J
50S ribosomal protein L13 protein, length: 142 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 65 175 126
95 % 65 175 169
90 % 65 175 180
70 % 65 175 200
50 % 79 209 194
40 % 260 405 71
30 % 260 405 77

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures