Sequence Similarity Clusters for the Entities in PDB 6GC0

Entity #1 | Chains: A
23S ribosomal RNA rna, length: 2904 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #10 | Chains: K
50S ribosomal protein L14 protein, length: 122 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 86 195 124
95 % 86 195 158
90 % 86 195 177
70 % 94 203 181
50 % 331 487 36
40 % 331 487 47
30 % 331 487 50
Entity #11 | Chains: L
50S ribosomal protein L15 protein, length: 143 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 85 193 134
95 % 86 194 165
90 % 86 194 182
70 % 86 194 208
50 % 94 202 215
40 % 326 469 64
30 % 326 469 66
Entity #12 | Chains: N
50S ribosomal protein L17 protein, length: 120 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 82 187 145
95 % 86 193 171
90 % 86 193 188
70 % 94 201 187
50 % 310 432 55
40 % 330 471 52
30 % 330 473 54
Entity #13 | Chains: O
50S ribosomal protein L18 protein, length: 116 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 84 191 136
95 % 84 191 176
90 % 84 191 191
70 % 84 191 216
50 % 310 454 54
40 % 303 435 73
30 % 303 435 78
Entity #14 | Chains: P
50S ribosomal protein L19 protein, length: 114 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 86 193 131
95 % 86 193 167
90 % 86 193 184
70 % 86 193 209
50 % 119 248 182
40 % 119 248 195
30 % 119 248 203
Entity #15 | Chains: Q
50S ribosomal protein L20 protein, length: 117 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 86 194 130
95 % 86 194 164
90 % 86 194 181
70 % 94 202 183
50 % 331 474 42
40 % 331 482 49
30 % 331 482 51
Entity #16 | Chains: R
50S ribosomal protein L21 protein, length: 103 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 86 190 140
95 % 86 190 182
90 % 86 190 196
70 % 86 190 220
50 % 94 198 223
40 % 330 469 63
30 % 330 469 65
Entity #17 | Chains: S
50S ribosomal protein L22 protein, length: 110 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 86 193 132
95 % 86 193 166
90 % 86 193 183
70 % 94 201 185
50 % 307 443 56
40 % 307 443 72
30 % 307 443 76
Entity #18 | Chains: T
50S ribosomal protein L23 protein, length: 93 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 86 197 122
95 % 86 197 155
90 % 86 197 169
70 % 86 197 198
50 % 90 201 217
40 % 324 471 61
30 % 324 471 63
Entity #19 | Chains: U
50S ribosomal protein L24 protein, length: 102 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 86 196 123
95 % 86 196 157
90 % 86 196 172
70 % 86 196 202
50 % 302 447 53
40 % 302 449 69
30 % 302 449 74
Entity #2 | Chains: B
5S ribosomal RNA rna, length: 119 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #20 | Chains: V
50S ribosomal protein L25 protein, length: 94 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 85 197 119
95 % 85 197 154
90 % 85 197 170
70 % 85 197 195
50 % 86 198 211
40 % 90 202 225
30 % 90 202 237
Entity #21 | Chains: W
50S ribosomal protein L27 protein, length: 76 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 85 192 137
95 % 85 193 174
90 % 85 193 190
70 % 118 226 175
50 % 330 471 46
40 % 330 471 58
30 % 330 471 61
Entity #22 | Chains: X
50S ribosomal protein L28 protein, length: 77 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 80 177 164
95 % 80 177 215
90 % 80 177 228
70 % 88 185 236
50 % 90 187 248
40 % 90 187 261
30 % 90 187 278
Entity #23 | Chains: Y
50S ribosomal protein L29 protein, length: 63 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 86 197 121
95 % 86 197 156
90 % 86 197 171
70 % 86 197 197
50 % 94 205 212
40 % 274 400 84
30 % 300 426 81
Entity #24 | Chains: Z
50S ribosomal protein L30 protein, length: 58 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 86 194 129
95 % 86 194 162
90 % 86 194 179
70 % 86 194 206
50 % 137 256 179
40 % 328 464 66
30 % 328 464 68
Entity #25 | Chains: 0
50S ribosomal protein L32 protein, length: 56 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 86 191 138
95 % 86 191 177
90 % 86 191 192
70 % 86 191 217
50 % 90 195 228
40 % 90 195 238
30 % 325 457 72
Entity #26 | Chains: 1
50S ribosomal protein L33 protein, length: 50 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 83 190 139
95 % 83 190 181
90 % 83 190 195
70 % 91 198 193
50 % 113 220 198
40 % 292 430 79
30 % 292 430 86
Entity #27 | Chains: 2
50S ribosomal protein L34 protein, length: 46 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 86 189 143
95 % 86 189 183
90 % 86 189 197
70 % 122 226 173
50 % 330 468 49
40 % 330 468 65
30 % 330 468 67
Entity #28 | Chains: 3
50S ribosomal protein L35 protein, length: 64 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 83 186 146
95 % 83 186 186
90 % 83 186 200
70 % 83 186 225
50 % 104 216 201
40 % 104 217 217
30 % 104 217 226
Entity #3 | Chains: C
50S ribosomal protein L2 protein, length: 271 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 84 190 141
95 % 84 190 179
90 % 84 190 193
70 % 92 198 191
50 % 325 474 45
40 % 325 474 57
30 % 325 474 60
Entity #4 | Chains: D
50S ribosomal protein L3 protein, length: 209 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 93 202 125
95 % 93 202 159
90 % 93 202 176
70 % 101 210 182
50 % 336 480 44
40 % 336 484 53
30 % 336 485 56
Entity #5 | Chains: E
50S ribosomal protein L4 protein, length: 201 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 86 193 133
95 % 86 193 168
90 % 86 193 185
70 % 90 197 196
50 % 94 201 219
40 % 115 234 205
30 % 331 466 69
Entity #6 | Chains: F
50S ribosomal protein L5 protein, length: 177 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 87 197 127
95 % 87 197 163
90 % 87 197 180
70 % 87 197 207
50 % 326 469 48
40 % 326 469 62
30 % 326 469 64
Entity #7 | Chains: G
50S ribosomal protein L6 protein, length: 176 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 85 192 135
95 % 85 192 172
90 % 85 192 189
70 % 85 192 212
50 % 93 200 221
40 % 324 475 55
30 % 324 479 55
Entity #8 | Chains: H
50S ribosomal protein L9 protein, length: 50 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 7 11 3940
95 % 7 11 4849
90 % 7 11 4906
70 % 7 11 4698
50 % 13 17 2657
40 % 16 21 2207
30 % 16 21 2234
Entity #9 | Chains: J
50S ribosomal protein L13 protein, length: 142 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 86 194 126
95 % 86 194 161
90 % 86 194 178
70 % 94 202 184
50 % 116 244 184
40 % 304 447 70
30 % 304 447 75

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures