Sequence Similarity Clusters for the Entities in PDB 6GBZ

Entity #1 | Chains: A
23S ribosomal RNA rna, length: 2904 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #10 | Chains: L
50S ribosomal protein L15 protein, length: 143 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 64 173 127
95 % 64 173 169
90 % 64 173 177
70 % 64 173 201
50 % 64 173 221
40 % 281 425 63
30 % 281 425 64
Entity #11 | Chains: N
50S ribosomal protein L17 protein, length: 120 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 63 169 136
95 % 64 172 172
90 % 64 172 180
70 % 64 172 203
50 % 273 396 57
40 % 285 427 53
30 % 285 429 54
Entity #12 | Chains: O
50S ribosomal protein L18 protein, length: 116 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 62 170 132
95 % 62 170 178
90 % 62 170 190
70 % 62 170 210
50 % 266 411 59
40 % 266 411 74
30 % 266 411 76
Entity #13 | Chains: P
50S ribosomal protein L19 protein, length: 114 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 64 172 128
95 % 64 172 171
90 % 64 172 179
70 % 64 172 202
50 % 83 213 190
40 % 83 213 201
30 % 83 213 208
Entity #14 | Chains: Q
50S ribosomal protein L20 protein, length: 117 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 64 173 123
95 % 64 173 166
90 % 64 173 174
70 % 64 173 196
50 % 286 430 46
40 % 286 438 52
30 % 286 438 53
Entity #15 | Chains: R
50S ribosomal protein L21 protein, length: 103 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 64 169 138
95 % 64 169 183
90 % 64 169 195
70 % 64 169 215
50 % 64 169 231
40 % 285 425 61
30 % 285 425 62
Entity #16 | Chains: S
50S ribosomal protein L22 protein, length: 110 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 64 172 129
95 % 64 172 173
90 % 64 172 181
70 % 64 172 204
50 % 262 399 60
40 % 262 399 76
30 % 262 399 77
Entity #17 | Chains: T
50S ribosomal protein L23 protein, length: 93 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 64 176 118
95 % 64 176 157
90 % 64 176 167
70 % 64 176 186
50 % 64 176 216
40 % 64 176 234
30 % 64 176 247
Entity #18 | Chains: U
50S ribosomal protein L24 protein, length: 102 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 64 175 120
95 % 64 175 161
90 % 64 175 170
70 % 64 175 190
50 % 257 403 58
40 % 257 403 73
30 % 257 405 74
Entity #19 | Chains: V
50S ribosomal protein L25 protein, length: 94 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 63 176 119
95 % 63 176 160
90 % 63 176 168
70 % 63 176 188
50 % 64 177 210
40 % 64 177 222
30 % 64 177 236
Entity #2 | Chains: C
50S ribosomal protein L2 protein, length: 271 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 62 169 135
95 % 62 169 181
90 % 62 169 192
70 % 62 169 213
50 % 280 430 49
40 % 280 430 58
30 % 280 430 59
Entity #20 | Chains: W
50S ribosomal protein L27 protein, length: 76 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 63 171 134
95 % 63 172 177
90 % 63 172 185
70 % 92 201 166
50 % 286 428 48
40 % 286 428 57
30 % 286 428 58
Entity #21 | Chains: X
50S ribosomal protein L28 protein, length: 77 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 59 157 158
95 % 59 157 210
90 % 59 157 220
70 % 59 157 239
50 % 61 159 249
40 % 61 159 259
30 % 61 159 278
Entity #22 | Chains: Y
50S ribosomal protein L29 protein, length: 63 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 64 176 117
95 % 64 176 159
90 % 64 176 166
70 % 64 176 187
50 % 64 176 217
40 % 237 364 88
30 % 263 390 81
Entity #23 | Chains: Z
50S ribosomal protein L30 protein, length: 58 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 64 173 126
95 % 64 173 170
90 % 64 173 178
70 % 64 173 199
50 % 100 220 182
40 % 284 421 65
30 % 284 421 65
Entity #24 | Chains: 0
50S ribosomal protein L32 protein, length: 56 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 64 170 133
95 % 64 170 180
90 % 64 170 189
70 % 64 170 212
50 % 64 170 228
40 % 284 417 68
30 % 284 417 70
Entity #25 | Chains: 1
50S ribosomal protein L33 protein, length: 50 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 61 169 137
95 % 61 169 182
90 % 61 169 193
70 % 61 169 214
50 % 85 194 199
40 % 250 389 84
30 % 250 389 85
Entity #26 | Chains: 2
50S ribosomal protein L34 protein, length: 46 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 64 168 139
95 % 64 168 185
90 % 64 168 197
70 % 92 197 167
50 % 275 407 54
40 % 275 407 69
30 % 275 407 71
Entity #27 | Chains: 3
50S ribosomal protein L35 protein, length: 64 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 61 165 141
95 % 61 165 188
90 % 61 165 201
70 % 61 165 219
50 % 73 186 207
40 % 283 419 67
30 % 283 419 68
Entity #28 | Chains: B
5S ribosomal RNA rna, length: 119 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #29 | Chains: M
50S ribosomal protein L16 protein, length: 136 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 53 161 159
95 % 61 169 184
90 % 61 169 196
70 % 61 169 216
50 % 281 431 47
40 % 281 431 56
30 % 281 431 57
Entity #3 | Chains: D
50S ribosomal protein L3 protein, length: 209 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 71 181 122
95 % 71 181 165
90 % 71 181 172
70 % 71 181 194
50 % 291 436 50
40 % 291 440 54
30 % 291 441 56
Entity #4 | Chains: E
50S ribosomal protein L4 protein, length: 201 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 64 172 130
95 % 64 172 175
90 % 64 172 182
70 % 64 172 205
50 % 64 172 224
40 % 77 197 212
30 % 286 422 66
Entity #5 | Chains: F
50S ribosomal protein L5 protein, length: 177 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 65 176 125
95 % 65 176 168
90 % 65 176 176
70 % 65 176 198
50 % 283 427 51
40 % 283 427 59
30 % 283 427 60
Entity #6 | Chains: G
50S ribosomal protein L6 protein, length: 176 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 63 171 131
95 % 63 171 176
90 % 63 171 183
70 % 63 171 207
50 % 63 171 226
40 % 281 433 55
30 % 281 437 55
Entity #7 | Chains: H
50S ribosomal protein L9 protein, length: 50 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 6 11 3646
95 % 6 11 4448
90 % 6 11 4506
70 % 6 11 4314
50 % 12 17 2453
40 % 15 21 2029
30 % 15 21 2045
Entity #8 | Chains: J
50S ribosomal protein L13 protein, length: 142 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 64 173 124
95 % 64 173 167
90 % 64 173 175
70 % 64 173 197
50 % 78 207 194
40 % 259 403 72
30 % 259 403 73
Entity #9 | Chains: K
50S ribosomal protein L14 protein, length: 122 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 64 174 121
95 % 64 174 164
90 % 64 174 173
70 % 64 174 195
50 % 286 443 44
40 % 286 443 51
30 % 286 443 52

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures