Sequence Similarity Clusters for the Entities in PDB 6FVY

Entity #1 | Chains: A,a
Proteasome subunit alpha type-1 protein, length: 244 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 297 309 12
95 % 297 309 20
90 % 297 309 23
70 % 297 309 34
50 % 327 362 39
40 % 332 368 41
30 % 2047 2279 2
Entity #10 | Chains: 3,j
Proteasome subunit beta type-3 protein, length: 204 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 294 306 14
95 % 294 306 28
90 % 294 306 31
70 % 294 306 39
50 % 323 358 42
40 % 328 364 45
30 % 328 364 47
Entity #11 | Chains: 4,k
Proteasome subunit beta type-4 protein, length: 195 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 293 305 18
95 % 293 305 30
90 % 293 305 32
70 % 293 305 42
50 % 293 305 75
40 % 325 361 48
30 % 327 363 49
Entity #12 | Chains: 5,l
Proteasome subunit beta type-5 protein, length: 212 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 182 182 77
95 % 247 247 62
90 % 247 247 68
70 % 302 312 28
50 % 305 316 63
40 % 305 316 80
30 % 322 339 30
Entity #13 | Chains: 6,m
Proteasome subunit beta type-6 protein, length: 222 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 261 273 21
95 % 294 306 26
90 % 294 306 28
70 % 294 306 37
50 % 294 306 71
40 % 303 329 79
30 % 303 329 85
Entity #14 | Chains: 7,n
Proteasome subunit beta type-7 protein, length: 232 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 294 306 16
95 % 294 306 27
90 % 294 306 29
70 % 294 306 38
50 % 294 306 73
40 % 294 306 90
30 % 294 306 90
Entity #15 | Chains: W
26S proteasome regulatory subunit RPN10 protein, length: 197 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 7 7 13407
95 % 7 7 12869
90 % 7 7 12689
70 % 7 7 12138
50 % 7 18 4588
40 % 8 19 4137
30 % 8 19 4029
Entity #16 | Chains: V
Ubiquitin carboxyl-terminal hydrolase RPN11 protein, length: 289 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 12 25 2358
95 % 12 25 3052
90 % 12 25 3136
70 % 12 25 3172
50 % 19 57 1228
40 % 19 57 1264
30 % 19 57 1299
Entity #17 | Chains: T
26S proteasome regulatory subunit RPN12 protein, length: 266 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 11 24 2489
95 % 11 24 3065
90 % 11 24 3301
70 % 11 24 3322
50 % 11 24 3245
40 % 11 24 3291
30 % 11 35 2114
Entity #18 | Chains: X
26S proteasome regulatory subunit RPN13 protein, length: 127 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 6 6 14210
95 % 6 6 14281
90 % 6 6 14087
70 % 6 6 13327
50 % 6 6 12155
40 % 6 6 11392
30 % 6 6 10480
Entity #19 | Chains: Y
26S proteasome complex subunit SEM1 protein, length: 89 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 14 28 1968
95 % 14 28 2511
90 % 14 28 2572
70 % 14 28 2644
50 % 14 28 2648
40 % 14 28 2706
30 % 14 28 2652
Entity #2 | Chains: B,b
Proteasome subunit alpha type-2 protein, length: 248 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 297 309 11
95 % 297 309 23
90 % 297 309 26
70 % 297 309 36
50 % 297 309 70
40 % 331 367 42
30 % 2048 2279 2
Entity #20 | Chains: Z
26S proteasome regulatory subunit RPN1 protein, length: 970 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 11 23 2767
95 % 11 23 3428
90 % 11 23 3499
70 % 11 23 3510
50 % 11 23 3450
40 % 18 53 1375
30 % 18 53 1409
Entity #21 | Chains: N
26S proteasome regulatory subunit RPN2 protein, length: 922 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 12 24 2400
95 % 12 24 3020
90 % 12 24 3106
70 % 12 24 3143
50 % 12 24 3136
40 % 19 56 1266
30 % 19 56 1304
Entity #22 | Chains: S
26S proteasome regulatory subunit RPN3 protein, length: 475 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 11 23 2729
95 % 11 23 3419
90 % 11 23 3492
70 % 11 23 3501
50 % 11 23 3441
40 % 11 23 3429
30 % 11 23 3364
Entity #23 | Chains: P
26S proteasome regulatory subunit RPN5 protein, length: 440 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 11 24 2481
95 % 11 24 3188
90 % 11 24 3272
70 % 11 24 3296
50 % 11 24 3272
40 % 18 56 1285
30 % 18 56 1327
Entity #24 | Chains: Q
26S proteasome regulatory subunit RPN6 protein, length: 434 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 11 24 2592
95 % 11 24 3149
90 % 11 24 3221
70 % 11 24 3255
50 % 11 24 3238
40 % 11 24 3242
30 % 11 24 3197
Entity #25 | Chains: R
26S proteasome regulatory subunit RPN7 protein, length: 405 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 11 24 2690
95 % 11 24 3336
90 % 11 24 3237
70 % 11 24 3269
50 % 11 24 3379
40 % 11 24 3366
30 % 18 56 1324
Entity #26 | Chains: U
26S proteasome regulatory subunit RPN8 protein, length: 304 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 6 6 17321
95 % 6 6 15497
90 % 6 6 15473
70 % 6 6 14351
50 % 6 17 4727
40 % 6 17 4631
30 % 6 17 4479
Entity #27 | Chains: O
26S proteasome regulatory subunit RPN9 protein, length: 388 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 11 25 2366
95 % 11 25 2964
90 % 11 25 3046
70 % 11 25 3084
50 % 11 25 3078
40 % 11 25 3080
30 % 18 57 1302
Entity #28 | Chains: H
26S proteasome regulatory subunit 7 homolog protein, length: 426 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 12 24 2613
95 % 12 24 3198
90 % 12 24 3268
70 % 19 49 1391
50 % 19 49 1427
40 % 19 49 1473
30 % 19 49 1506
Entity #29 | Chains: I
26S proteasome regulatory subunit 4 homolog protein, length: 385 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 6 6 16644
95 % 6 6 14658
90 % 6 6 14449
70 % 6 16 5186
50 % 30 77 598
40 % 48 147 385
30 % 48 147 400
Entity #3 | Chains: C,c
Proteasome subunit alpha type-3 protein, length: 241 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 297 309 10
95 % 297 309 21
90 % 297 309 24
70 % 297 309 35
50 % 329 365 36
40 % 331 367 43
30 % 2049 2279 2
Entity #30 | Chains: K
26S proteasome regulatory subunit 6B homolog protein, length: 394 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 12 24 2620
95 % 12 24 3062
90 % 12 24 3276
70 % 12 24 3352
50 % 19 55 1275
40 % 19 55 1314
30 % 37 101 695
Entity #31 | Chains: L
26S proteasome subunit RPT4 protein, length: 388 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 6 6 15849
95 % 6 6 16457
90 % 6 6 14929
70 % 6 6 15435
50 % 6 6 13925
40 % 49 147 385
30 % 49 147 400
Entity #32 | Chains: M
26S proteasome regulatory subunit 6A protein, length: 421 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 12 24 2612
95 % 12 24 3233
90 % 12 24 3267
70 % 12 33 2299
50 % 19 46 1532
40 % 19 46 1574
30 % 38 101 695
Entity #33 | Chains: J
26S proteasome regulatory subunit 8 homolog protein, length: 405 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 12 24 2485
95 % 12 24 3216
90 % 12 24 3289
70 % 19 55 1228
50 % 31 77 598
40 % 50 147 385
30 % 50 147 400
Entity #4 | Chains: D,d
Proteasome subunit alpha type-4 protein, length: 252 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 297 309 9
95 % 297 309 19
90 % 297 309 22
70 % 297 309 32
50 % 328 364 37
40 % 349 394 18
30 % 2050 2279 2
Entity #5 | Chains: E,e
Proteasome subunit alpha type-5 protein, length: 245 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 296 308 13
95 % 297 309 24
90 % 298 310 21
70 % 298 310 31
50 % 330 366 35
40 % 330 366 44
30 % 2051 2279 2
Entity #6 | Chains: F,f
Proteasome subunit alpha type-6 protein, length: 232 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 295 307 17
95 % 297 309 22
90 % 297 309 25
70 % 297 309 33
50 % 297 309 69
40 % 297 309 88
30 % 2052 2279 2
Entity #7 | Chains: G,g
Probable proteasome subunit alpha type-7 protein, length: 245 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 45 45 494
95 % 45 45 662
90 % 45 45 696
70 % 45 45 725
50 % 75 98 334
40 % 77 100 336
30 % 2053 2279 2
Entity #8 | Chains: 1,h
Proteasome subunit beta type-1 protein, length: 196 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 294 306 15
95 % 294 306 29
90 % 294 306 30
70 % 294 306 40
50 % 294 306 74
40 % 297 310 87
30 % 297 310 88
Entity #9 | Chains: 2,i
Proteasome subunit beta type-2 protein, length: 226 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 240 240 42
95 % 273 285 37
90 % 284 296 38
70 % 284 296 46
50 % 317 339 53
40 % 317 339 69
30 % 317 339 71

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures