Sequence Similarity Clusters for the Entities in PDB 6FVT

Entity #1 | Chains: A,a
Proteasome subunit alpha type-1 protein, length: 241 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 292 309 12
95 % 292 309 23
90 % 292 309 26
70 % 292 309 36
50 % 321 361 41
40 % 326 367 44
30 % 2006 2273 2
Entity #10 | Chains: 3,j
Proteasome subunit beta type-3 protein, length: 204 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 289 306 14
95 % 289 306 27
90 % 289 306 29
70 % 289 306 38
50 % 317 357 42
40 % 322 363 46
30 % 322 363 48
Entity #11 | Chains: 4,k
Proteasome subunit beta type-4 protein, length: 195 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 288 305 18
95 % 288 305 30
90 % 288 305 32
70 % 288 305 41
50 % 288 305 75
40 % 319 360 49
30 % 321 362 50
Entity #12 | Chains: 5,l
Proteasome subunit beta type-5 protein, length: 212 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 177 182 76
95 % 242 247 61
90 % 242 247 68
70 % 297 312 28
50 % 300 316 63
40 % 300 316 81
30 % 317 339 30
Entity #13 | Chains: 6,m
Proteasome subunit beta type-6 protein, length: 222 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 256 273 21
95 % 289 306 29
90 % 289 306 30
70 % 289 306 40
50 % 289 306 74
40 % 297 328 79
30 % 297 328 86
Entity #14 | Chains: 7,n
Proteasome subunit beta type-7 protein, length: 232 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 289 306 16
95 % 289 306 28
90 % 289 306 31
70 % 289 306 39
50 % 289 306 73
40 % 289 306 90
30 % 289 306 91
Entity #15 | Chains: W
26S proteasome regulatory subunit RPN10 protein, length: 197 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 7 13387
95 % 2 7 12921
90 % 2 7 13019
70 % 2 7 12122
50 % 2 18 4508
40 % 3 19 4196
30 % 3 19 4097
Entity #16 | Chains: V
Ubiquitin carboxyl-terminal hydrolase RPN11 protein, length: 289 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 7 25 2383
95 % 7 25 2996
90 % 7 25 3073
70 % 7 25 3123
50 % 14 57 1232
40 % 14 57 1273
30 % 14 57 1317
Entity #17 | Chains: T
26S proteasome regulatory subunit RPN12 protein, length: 266 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 6 24 2565
95 % 6 24 3065
90 % 6 24 3143
70 % 6 24 3317
50 % 6 24 3187
40 % 6 24 3240
30 % 6 35 2144
Entity #18 | Chains: X
26S proteasome regulatory subunit RPN13 protein, length: 127 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 6 14164
95 % 1 6 14233
90 % 1 6 14028
70 % 1 6 13309
50 % 1 6 12129
40 % 1 6 11365
30 % 1 6 10452
Entity #19 | Chains: Y
26S proteasome complex subunit SEM1 protein, length: 89 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 9 28 1941
95 % 9 28 2512
90 % 9 28 2571
70 % 9 28 2623
50 % 9 28 2647
40 % 9 28 2670
30 % 9 28 2650
Entity #2 | Chains: B,b
Proteasome subunit alpha type-2 protein, length: 249 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 292 309 9
95 % 292 309 20
90 % 292 309 23
70 % 292 309 33
50 % 292 309 70
40 % 325 366 42
30 % 2007 2273 2
Entity #20 | Chains: Z
26S proteasome regulatory subunit RPN1 protein, length: 970 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 6 23 2737
95 % 6 23 3425
90 % 6 23 3470
70 % 6 23 3505
50 % 6 23 3460
40 % 13 53 1386
30 % 13 53 1416
Entity #21 | Chains: N
26S proteasome regulatory subunit RPN2 protein, length: 922 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 7 24 2401
95 % 7 24 3014
90 % 7 24 3086
70 % 7 24 3142
50 % 7 24 3141
40 % 14 56 1271
30 % 14 56 1314
Entity #22 | Chains: S
26S proteasome regulatory subunit RPN3 protein, length: 475 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 6 23 2724
95 % 6 23 3384
90 % 6 23 3457
70 % 6 23 3469
50 % 6 23 3423
40 % 6 23 3403
30 % 6 23 3349
Entity #23 | Chains: P
26S proteasome regulatory subunit RPN5 protein, length: 440 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 6 24 2562
95 % 6 24 3055
90 % 6 24 3289
70 % 6 24 3322
50 % 6 24 3178
40 % 13 56 1288
30 % 13 56 1320
Entity #24 | Chains: Q
26S proteasome regulatory subunit RPN6 protein, length: 434 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 6 24 2427
95 % 6 24 3091
90 % 6 24 3165
70 % 6 24 3208
50 % 6 24 3198
40 % 6 24 3201
30 % 6 24 3162
Entity #25 | Chains: R
26S proteasome regulatory subunit RPN7 protein, length: 405 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 6 24 2667
95 % 6 24 3272
90 % 6 24 3348
70 % 6 24 3367
50 % 6 24 3200
40 % 6 24 3203
30 % 13 56 1333
Entity #26 | Chains: U
26S proteasome regulatory subunit RPN8 protein, length: 304 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 6 17726
95 % 1 6 16382
90 % 1 6 16097
70 % 1 6 15090
50 % 1 17 4633
40 % 1 17 4535
30 % 1 17 4396
Entity #27 | Chains: O
26S proteasome regulatory subunit RPN9 protein, length: 388 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 6 25 2335
95 % 6 25 2999
90 % 6 25 3076
70 % 6 25 3128
50 % 6 25 3126
40 % 6 25 3130
30 % 13 57 1303
Entity #28 | Chains: H
26S proteasome regulatory subunit 7 homolog protein, length: 426 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 7 24 2619
95 % 7 24 3186
90 % 7 24 3257
70 % 14 49 1410
50 % 14 49 1429
40 % 14 49 1479
30 % 14 49 1508
Entity #29 | Chains: I
26S proteasome regulatory subunit 4 homolog protein, length: 385 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 6 16564
95 % 1 6 14620
90 % 1 6 14405
70 % 1 16 5192
50 % 20 77 596
40 % 33 147 386
30 % 33 147 397
Entity #3 | Chains: C,c
Proteasome subunit alpha type-3 protein, length: 244 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 292 309 11
95 % 292 309 21
90 % 292 309 24
70 % 292 309 34
50 % 323 364 36
40 % 325 366 43
30 % 2008 2273 2
Entity #30 | Chains: K
26S proteasome regulatory subunit 6B homolog protein, length: 394 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 7 24 2604
95 % 7 24 3153
90 % 7 24 3226
70 % 7 24 3263
50 % 14 55 1273
40 % 14 55 1311
30 % 27 101 693
Entity #31 | Chains: L
26S proteasome subunit RPT4 protein, length: 388 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 6 18098
95 % 1 6 16920
90 % 1 6 16639
70 % 1 6 15562
50 % 1 6 14045
40 % 34 147 386
30 % 34 147 397
Entity #32 | Chains: M
26S proteasome regulatory subunit 6A protein, length: 421 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 7 24 2649
95 % 7 24 3242
90 % 7 24 3316
70 % 7 33 2288
50 % 14 46 1535
40 % 14 46 1580
30 % 28 101 693
Entity #33 | Chains: J
26S proteasome regulatory subunit 8 homolog protein, length: 405 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 7 24 2703
95 % 7 24 3345
90 % 7 24 3410
70 % 14 55 1231
50 % 21 77 596
40 % 35 147 386
30 % 35 147 397
Entity #4 | Chains: D,d
Proteasome subunit alpha type-4 protein, length: 251 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 292 309 10
95 % 292 309 22
90 % 292 309 25
70 % 292 309 35
50 % 322 363 38
40 % 343 393 18
30 % 2009 2273 2
Entity #5 | Chains: E,e
Proteasome subunit alpha type-5 protein, length: 244 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 291 308 13
95 % 292 309 24
90 % 293 310 21
70 % 293 310 31
50 % 324 365 35
40 % 324 365 45
30 % 2010 2273 2
Entity #6 | Chains: F,f
Proteasome subunit alpha type-6 protein, length: 231 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 290 307 17
95 % 292 309 19
90 % 292 309 22
70 % 292 309 32
50 % 292 309 69
40 % 292 309 88
30 % 2011 2273 2
Entity #7 | Chains: G,g
Probable proteasome subunit alpha type-7 protein, length: 245 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 40 45 495
95 % 40 45 662
90 % 40 45 693
70 % 40 45 725
50 % 69 97 333
40 % 71 99 343
30 % 2012 2273 2
Entity #8 | Chains: 1,h
Proteasome subunit beta type-1 protein, length: 196 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 289 306 15
95 % 289 306 26
90 % 289 306 28
70 % 289 306 37
50 % 289 306 72
40 % 292 310 87
30 % 292 310 89
Entity #9 | Chains: 2,i
Proteasome subunit beta type-2 protein, length: 226 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 235 240 42
95 % 268 285 37
90 % 279 296 38
70 % 279 296 46
50 % 312 339 53
40 % 312 339 69
30 % 312 339 72

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures