6FKR

Crystal structure of the dolphin proline-rich antimicrobial peptide Tur1A bound to the Thermus thermophilus 70S ribosome


Sequence Similarity Clusters for the Entities in PDB 6FKR

Entity #1 | Chains: 1A,2A
23S ribosomal RNA rna, length: 2901 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #10 | Chains: 1O,2O
50S ribosomal protein L14 protein, length: 122 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 65 169 88
95 % 65 194 85
90 % 65 194 93
70 % 66 261 76
50 % 86 443 40
40 % 86 443 50
30 % 86 443 51
Entity #11 | Chains: 1P,2P
50S ribosomal protein L15 protein, length: 149 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 65 194 64
95 % 65 194 89
90 % 65 194 96
70 % 65 194 110
50 % 65 228 110
40 % 85 425 59
30 % 85 425 61
Entity #12 | Chains: 1Q,2Q
50S ribosomal protein L16 protein, length: 141 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 65 178 83
95 % 65 195 81
90 % 65 195 88
70 % 65 222 87
50 % 85 431 43
40 % 85 431 54
30 % 85 431 56
Entity #13 | Chains: 1R,2R
50S ribosomal protein L17 protein, length: 118 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 66 199 50
95 % 66 199 74
90 % 66 199 80
70 % 66 199 95
50 % 86 396 53
40 % 86 427 52
30 % 86 429 53
Entity #14 | Chains: 1S,2S
50S ribosomal protein L18 protein, length: 110 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 65 179 79
95 % 65 179 107
90 % 65 179 115
70 % 65 179 124
50 % 85 411 54
40 % 85 411 69
30 % 85 411 76
Entity #15 | Chains: 1T,2T
50S ribosomal protein L19 protein, length: 131 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 65 175 84
95 % 65 192 96
90 % 65 192 103
70 % 3 8 5525
50 % 3 8 5348
40 % 3 8 5205
30 % 3 8 4972
Entity #16 | Chains: 1U,2U
50S ribosomal protein L20 protein, length: 116 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 65 189 73
95 % 65 194 95
90 % 65 194 101
70 % 65 194 114
50 % 86 430 42
40 % 86 438 51
30 % 86 438 52
Entity #17 | Chains: 1V,2V
50S ribosomal protein L21 protein, length: 101 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 65 194 66
95 % 65 194 91
90 % 65 194 98
70 % 65 194 112
50 % 65 246 105
40 % 85 425 61
30 % 85 425 63
Entity #18 | Chains: 1W,2W
50S ribosomal protein L22 protein, length: 112 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 66 202 54
95 % 67 203 77
90 % 67 203 84
70 % 67 203 98
50 % 87 399 56
40 % 87 399 72
30 % 87 399 77
Entity #19 | Chains: 1X,2X
50S ribosomal protein L23 protein, length: 95 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 65 195 59
95 % 65 195 83
90 % 65 195 89
70 % 65 195 104
50 % 65 221 114
40 % 65 255 120
30 % 65 255 131
Entity #2 | Chains: 1B,2B
5S ribosomal RNA rna, length: 120 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #20 | Chains: 1Y,2Y
50S ribosomal protein L24 protein, length: 107 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 65 194 60
95 % 65 194 86
90 % 65 194 91
70 % 65 194 106
50 % 85 403 55
40 % 85 403 70
30 % 85 405 74
Entity #21 | Chains: 1Z,2Z
50S ribosomal protein L25 protein, length: 203 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 66 194 69
95 % 67 195 84
90 % 67 195 90
70 % 67 195 105
50 % 67 195 132
40 % 67 195 149
30 % 67 207 149
Entity #22 | Chains: 10,20
50S ribosomal protein L27 protein, length: 77 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 63 176 82
95 % 66 195 80
90 % 66 195 87
70 % 66 195 103
50 % 87 428 44
40 % 87 428 55
30 % 87 428 57
Entity #23 | Chains: 11,21
50S ribosomal protein L28 protein, length: 97 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 65 165 91
95 % 65 186 100
90 % 65 186 107
70 % 65 186 117
50 % 65 186 136
40 % 65 186 154
30 % 65 186 160
Entity #24 | Chains: 12,22
50S ribosomal protein L29 protein, length: 70 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 65 179 76
95 % 65 187 103
90 % 65 187 109
70 % 65 187 121
50 % 65 187 138
40 % 85 364 85
30 % 85 390 80
Entity #25 | Chains: 13,23
50S ribosomal protein L30 protein, length: 59 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 66 201 53
95 % 66 201 78
90 % 66 201 85
70 % 66 201 100
50 % 66 201 126
40 % 86 421 62
30 % 86 421 64
Entity #26 | Chains: 14,24
50S ribosomal protein L31 protein, length: 69 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 65 177 89
95 % 65 177 117
90 % 65 177 122
70 % 65 177 130
50 % 65 193 144
40 % 65 264 125
30 % 65 265 136
Entity #27 | Chains: 15,25
50S ribosomal protein L32 protein, length: 59 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 65 178 81
95 % 65 189 102
90 % 65 189 108
70 % 65 189 119
50 % 65 223 118
40 % 65 223 139
30 % 85 417 70
Entity #28 | Chains: 16,26
50S ribosomal protein L33 protein, length: 53 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 52 174 86
95 % 52 175 115
90 % 52 175 120
70 % 52 175 128
50 % 52 195 142
40 % 72 389 81
30 % 72 389 85
Entity #29 | Chains: 17,27
50S ribosomal protein L34 protein, length: 48 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 65 194 62
95 % 65 194 93
90 % 65 194 92
70 % 65 194 107
50 % 85 407 51
40 % 85 407 66
30 % 85 407 71
Entity #3 | Chains: 1D,2D
50S ribosomal protein L2 protein, length: 275 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 66 195 68
95 % 66 195 94
90 % 66 195 100
70 % 66 219 90
50 % 86 430 45
40 % 86 430 56
30 % 86 430 58
Entity #30 | Chains: 18,28
50S ribosomal protein L35 protein, length: 64 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 66 195 65
95 % 66 195 90
90 % 66 195 97
70 % 66 195 111
50 % 66 223 113
40 % 86 419 64
30 % 86 419 67
Entity #31 | Chains: 19,29
50S ribosomal protein L36 protein, length: 37 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 44 144 105
95 % 44 144 139
90 % 44 144 144
70 % 44 202 129
50 % 63 369 79
40 % 63 369 94
30 % 63 369 97
Entity #32 | Chains: 1a,2a
16 ribosomal RNA rna, length: 1507 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #33 | Chains: 1b,2b
30S ribosomal protein S2 protein, length: 231 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 96 326 29
95 % 96 328 45
90 % 96 328 50
70 % 96 328 58
50 % 116 503 26
40 % 116 509 34
30 % 116 509 37
Entity #34 | Chains: 1c,2c
30S ribosomal protein S3 protein, length: 206 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 10 56 486
95 % 10 56 667
90 % 10 56 696
70 % 10 56 732
50 % 27 151 259
40 % 27 151 273
30 % 27 157 275
Entity #35 | Chains: 1d,2d
30S ribosomal protein S4 protein, length: 208 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 96 320 36
95 % 96 328 44
90 % 96 328 49
70 % 96 328 57
50 % 96 349 81
40 % 116 517 28
30 % 116 517 32
Entity #36 | Chains: 1e,2e
30S ribosomal protein S5 protein, length: 148 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 96 327 31
95 % 96 327 51
90 % 96 327 55
70 % 96 327 62
50 % 117 507 25
40 % 117 507 35
30 % 117 507 38
Entity #37 | Chains: 1f,2f
30S ribosomal protein S6 protein, length: 100 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 97 332 24
95 % 103 338 39
90 % 103 338 43
70 % 103 338 51
50 % 103 338 87
40 % 103 338 100
30 % 104 360 96
Entity #38 | Chains: 1g,2g
30S ribosomal protein S7 protein, length: 155 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 97 331 25
95 % 97 332 43
90 % 97 332 47
70 % 97 330 56
50 % 117 445 49
40 % 117 451 60
30 % 117 451 62
Entity #39 | Chains: 1h,2h
30S ribosomal protein S8 protein, length: 137 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 97 327 28
95 % 97 327 47
90 % 97 331 48
70 % 97 331 54
50 % 119 516 19
40 % 119 522 26
30 % 131 679 25
Entity #4 | Chains: 1E,2E
50S ribosomal protein L3 protein, length: 204 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 65 194 63
95 % 65 194 88
90 % 65 194 95
70 % 65 194 109
50 % 92 436 46
40 % 92 440 53
30 % 92 441 55
Entity #40 | Chains: 1i,2i
30S ribosomal protein S9 protein, length: 127 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 88 226 61
95 % 96 327 49
90 % 96 327 53
70 % 96 327 61
50 % 116 501 28
40 % 116 501 36
30 % 116 501 39
Entity #41 | Chains: 1j,2j
30S ribosomal protein S10 protein, length: 97 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 96 325 33
95 % 96 326 54
90 % 96 326 58
70 % 96 326 65
50 % 117 511 22
40 % 117 511 31
30 % 117 533 28
Entity #42 | Chains: 1k,2k
30S ribosomal protein S11 protein, length: 114 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 96 327 30
95 % 96 327 48
90 % 96 327 52
70 % 96 327 60
50 % 116 510 24
40 % 116 510 33
30 % 116 510 36
Entity #43 | Chains: 1l,2l
30S ribosomal protein S12 protein, length: 122 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 19 55 663
95 % 96 334 41
90 % 96 334 45
70 % 117 514 15
50 % 117 529 16
40 % 117 529 24
30 % 117 529 30
Entity #44 | Chains: 1m,2m
30S ribosomal protein S13 protein, length: 116 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 96 328 27
95 % 96 328 46
90 % 96 328 51
70 % 96 328 59
50 % 117 514 23
40 % 117 514 32
30 % 117 514 35
Entity #45 | Chains: 1n,2n
30S ribosomal protein S14 type Z protein, length: 60 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 96 326 32
95 % 96 326 52
90 % 96 326 56
70 % 96 333 53
50 % 96 344 86
40 % 96 344 99
30 % 96 344 103
Entity #46 | Chains: 1o,2o
30S ribosomal protein S15 protein, length: 88 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 96 330 26
95 % 99 335 40
90 % 99 335 44
70 % 99 335 52
50 % 122 523 17
40 % 122 523 27
30 % 122 523 31
Entity #47 | Chains: 1p,2p
30S ribosomal protein S16 protein, length: 82 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 96 322 34
95 % 96 327 50
90 % 96 327 54
70 % 96 327 63
50 % 96 327 88
40 % 96 327 101
30 % 96 327 105
Entity #48 | Chains: 1q,2q
30S ribosomal protein S17 protein, length: 99 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 84 219 52
95 % 96 320 56
90 % 96 324 60
70 % 96 324 67
50 % 96 324 90
40 % 96 324 103
30 % 96 324 109
Entity #49 | Chains: 1r,2r
30S ribosomal protein S18 protein, length: 68 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 10 47 614
95 % 10 55 680
90 % 10 55 708
70 % 10 55 746
50 % 10 55 797
40 % 10 55 839
30 % 10 55 869
Entity #5 | Chains: 1F,2F
50S ribosomal protein L4 protein, length: 203 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 66 179 80
95 % 66 195 87
90 % 66 195 94
70 % 66 195 108
50 % 66 224 111
40 % 66 234 131
30 % 87 422 65
Entity #50 | Chains: 1s,2s
30S ribosomal protein S19 protein, length: 83 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 90 285 41
95 % 90 285 60
90 % 90 285 66
70 % 97 330 55
50 % 117 516 20
40 % 117 516 29
30 % 117 516 33
Entity #51 | Chains: 1t,2t
30S ribosomal protein S20 protein, length: 96 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 91 270 44
95 % 96 326 53
90 % 96 326 57
70 % 96 326 64
50 % 96 326 89
40 % 96 326 102
30 % 96 326 106
Entity #52 | Chains: 1u,2u
30S ribosomal protein Thx protein, length: 23 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 7 32 979
95 % 7 32 1340
90 % 7 32 1375
70 % 7 32 1410
50 % 7 32 1445
40 % 7 32 1495
30 % 7 32 1521
Entity #53 | Chains: 1y
Tur1A peptide protein, length: 22 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 76537
95 % 1 1 52401
90 % 1 1 49625
70 % 1 1 43452
50 % 1 1 38676
40 % 1 1 33929
30 % 1 1 29957
Entity #54 | Chains: 1z,2z
Ribosome-associated inhibitor A protein, length: 97 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 4 6551
95 % 3 4 7230
90 % 3 4 7150
70 % 3 4 7017
50 % 3 4 6687
40 % 3 4 6417
30 % 3 4 6075
Entity #6 | Chains: 1G,2G
50S ribosomal protein L5 protein, length: 181 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 68 180 78
95 % 68 197 79
90 % 68 197 86
70 % 68 221 85
50 % 90 427 47
40 % 90 427 57
30 % 90 427 59
Entity #7 | Chains: 1H,2H
50S ribosomal protein L6 protein, length: 174 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 65 194 67
95 % 65 194 92
90 % 65 194 99
70 % 65 194 113
50 % 65 226 109
40 % 65 216 140
30 % 86 437 54
Entity #8 | Chains: 1I,2I
50S ribosomal protein L9 protein, length: 147 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 57 138 103
95 % 57 160 122
90 % 57 160 128
70 % 57 160 137
50 % 57 165 156
40 % 76 338 95
30 % 76 341 98
Entity #9 | Chains: 1N,2N
50S ribosomal protein L13 protein, length: 140 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 65 190 72
95 % 65 191 99
90 % 65 191 105
70 % 65 191 116
50 % 65 196 131
40 % 85 403 68
30 % 85 403 75

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures