Sequence Similarity Clusters for the Entities in PDB 6FDK

Entity #1 | Chains: A
Deubiquitinase and deneddylase Dub1 protein, length: 266 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 74383
95 % 1 8 8508 Flexibility: Low
Max RMSD: 1.3, Avg RMSD: 0.8
PDBFlex
90 % 1 8 8865
70 % 1 8 8614
50 % 1 8 8050
40 % 1 8 7744
30 % 1 8 7267
Entity #2 | Chains: B
Polyubiquitin-B protein, length: 76 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 29 393 4
95 % 39 491 6 Flexibility: Low
Max RMSD: 12.4, Avg RMSD: 1.4
PDBFlex
90 % 40 504 6
70 % 48 555 9
50 % 48 570 10
40 % 48 574 12
30 % 51 595 19

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures