6FAB

THREE-DIMENSIONAL STRUCTURE OF MURINE ANTI-P-AZOPHENYLARSONATE FAB 36-71. 1. X-RAY CRYSTALLOGRAPHY, SITE-DIRECTED MUTAGENESIS, AND MODELING OF THE COMPLEX WITH HAPTEN


Sequence Similarity Clusters for the Entities in PDB 6FAB

Entity #1 | Chains: L
IGG1-KAPPA 36-71 FAB (LIGHT CHAIN) protein, length: 214 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 2 46578
95 % 2 2 30596 Flexibility: Low
Max RMSD: 0.6, Avg RMSD: 0.6
PDBFlex
90 % 13 73 461
70 % 471 2418 2
50 % 583 3071 2
40 % 583 3071 2
30 % 1201 6236 1
Entity #2 | Chains: H
IGG1-KAPPA 36-71 FAB (HEAVY CHAIN) protein, length: 222 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 72048
95 % 2 9 7041 Flexibility: Low
Max RMSD: 1.6, Avg RMSD: 1.0
PDBFlex
90 % 2 9 7031
70 % 573 2969 1
50 % 608 3121 1
40 % 608 3121 1
30 % 1202 6236 1

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures


ACTION - (A) Select for download / view details OR (B) Select two chains for comparison
Rank PDB ID Entity ID Chains Description Details Taxonomy EC Number
1 1JFQ 2 H ANTIGEN-BINDING FRAGMENT OF ANTI-PHENYLARSONATE ANTIBODY HEAVY CHAIN 10090
2 6FAB 2 H IGG1-KAPPA 36-71 FAB (HEAVY CHAIN) 10090
3 5VGA 2 B Fab 36-65 heavy chain 10090
4 4BH8 2 B ANTI-ARS MURINE GERMLINE MONOCLONAL ANTIBODY 36-65 ANTIGEN BINDING FRAGMENT 10090
5 2A6I 2 B Germline antibody 36-65 Fab heavy chain 10090
6 2A6J 2 B, H Germline antibody 36-65 Fab heavy chain 10090
7 4BH7 2 B ANTI-ARS MURINE GERMLINE MONOCLONAL ANTIBODY 36-65 ANTIGEN BINDING FRAGMENT 10090
8 2A6D 2 B, H Germline antibody 36-65 Fab Heavy chain 10090
9 2A6K 2 B, H Germline antibody 36-65 Fab heavy chain Fab 10090