Sequence Similarity Clusters for the Entities in PDB 6F5D

Entity #1 | Chains: A,B,C
ATP synthase subunit alpha, mitochondrial protein, length: 560 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 30983
95 % 1 1 24905 Flexibility: Low
Max RMSD: 0.8, Avg RMSD: 0.6
PDBFlex
90 % 1 1 24134
70 % 1 1 22093
50 % 1 1 19454
40 % 1 1 17823
30 % 1 1 15985
Entity #2 | Chains: D,E,F
ATP synthase subunit beta, mitochondrial protein, length: 498 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 30988
95 % 1 1 24906 Flexibility: Low
Max RMSD: 3.7, Avg RMSD: 2.5
PDBFlex
90 % 1 1 24135
70 % 1 1 22094
50 % 33 62 209
40 % 33 62 224
30 % 33 62 236
Entity #3 | Chains: G
ATP synthase gamma subunit protein, length: 304 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 60200
95 % 1 1 44344
90 % 1 1 42179
70 % 1 1 37288
50 % 1 1 32308
40 % 1 1 29241
30 % 1 1 25876
Entity #4 | Chains: H
ATP synthase subunit delta, mitochondrial protein, length: 165 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 60201
95 % 1 1 44345
90 % 1 1 42180
70 % 1 1 37289
50 % 1 1 32309
40 % 1 1 29242
30 % 1 1 25877
Entity #5 | Chains: I
ATP synthase subunit epsilon, mitochondrial protein, length: 66 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 80273
95 % 1 1 48636
90 % 1 1 42181
70 % 1 1 46462
50 % 1 1 40130
40 % 1 1 29243
30 % 1 1 25878
Entity #6 | Chains: J,K,L
ATP synthase subunit p18, mitochondrial protein, length: 170 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 33844
95 % 1 1 24907 Flexibility: Low
Max RMSD: 1.0, Avg RMSD: 0.8
PDBFlex
90 % 1 1 24136
70 % 1 1 22095
50 % 1 1 19455
40 % 1 1 17824
30 % 1 1 15986

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures