Sequence Similarity Clusters for the Entities in PDB 6F38

Entity #1 | Chains: A,B,C,D,E,F,G,I
ARP1 actin related protein 1 homolog A protein, length: 376 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 4 2139
95 % 1 7 1307
90 % 1 7 1344
70 % 1 7 1376
50 % 183 264 15
40 % 203 284 19
30 % 224 305 26
Entity #10 | Chains: U
Dynactin 6 protein, length: 190 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 5 18546
95 % 2 6 12984
90 % 2 6 12808
70 % 2 6 11857
50 % 2 6 11094
40 % 2 6 10426
30 % 2 6 9630
Entity #11 | Chains: V
Dynactin subunit 5 protein, length: 182 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 4 22713
95 % 1 5 17326
90 % 1 5 17399
70 % 1 5 16227
50 % 1 5 14647
40 % 1 5 13630
30 % 1 5 12392
Entity #12 | Chains: X,x
HOOK3 protein, length: 223 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #13 | Chains: Y
Dynactin Subunit 4 protein, length: 264 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #14 | Chains: Z
Dynactin Subunit 1 protein, length: 52 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #15 | Chains: a
Dynactin subunit 2 protein, length: 68 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 2 39388
95 % 1 3 26187
90 % 1 3 25321
70 % 1 3 23054
50 % 1 3 20315
40 % 1 3 18584
30 % 1 3 16675
Entity #16 | Chains: b
Dynactin subunit 2 protein, length: 90 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 2 21343
95 % 1 3 16906
90 % 1 3 16607
70 % 1 3 15788
50 % 1 3 14334
40 % 1 3 13277
30 % 1 3 12084
Entity #17 | Chains: c
Dynactin subunit 2 protein, length: 50 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 60400
95 % 1 3 29654
90 % 1 3 28547
70 % 1 3 24622
50 % 1 3 21620
40 % 1 3 19752
30 % 1 3 17701
Entity #18 | Chains: d
Dynactin subunit 2 protein, length: 29 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 75342
95 % 1 1 45426
90 % 1 1 43152
70 % 1 1 38015
50 % 1 4 17417
40 % 1 4 16077
30 % 1 4 14512
Entity #19 | Chains: e,f,m,n
Cytoplasmic dynein 1 heavy chain 1 protein, length: 1455 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 2 14036
95 % 1 2 14162
90 % 1 2 13973
70 % 1 2 13180
50 % 1 2 12029
40 % 1 2 11296
30 % 1 2 10398
Entity #2 | Chains: H
Actin, cytoplasmic 1 protein, length: 375 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 6 13 1167
95 % 41 53 481
90 % 162 232 9
70 % 183 257 14
50 % 184 264 15
40 % 204 284 19
30 % 225 305 26
Entity #20 | Chains: g,h,o,p
Cytoplasmic dynein 1 intermediate chain 2 protein, length: 612 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 5 5530
95 % 1 5 6513
90 % 1 5 6532
70 % 1 5 6445
50 % 1 5 6159
40 % 1 5 5980
30 % 1 5 5692
Entity #21 | Chains: i,j,q,r
Cytoplasmic dynein 1 light intermediate chain 2 protein, length: 492 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 3 8761
95 % 1 3 9793
90 % 1 3 9301
70 % 1 3 9402
50 % 1 3 8811
40 % 1 3 8441
30 % 1 3 7818
Entity #22 | Chains: k,l,s,t
Dynein light chain roadblock-type 1 protein, length: 96 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 4 10 2390
95 % 4 10 3068
90 % 4 11 2860
70 % 6 13 2114
50 % 6 13 2167
40 % 6 13 2195
30 % 6 13 2213
Entity #23 | Chains: z
Dynactin Subunit 1 protein, length: 53 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #3 | Chains: J
Actin related protein 10 homolog protein, length: 390 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 6 15902
95 % 1 6 14059
90 % 1 6 13487
70 % 1 6 12769
50 % 1 6 11965
40 % 1 6 11230
30 % 1 6 10147
Entity #4 | Chains: K
Capping protein (Actin filament) muscle Z-line, alpha 1 protein, length: 286 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 7 13465
95 % 1 7 13264
90 % 11 19 1990
70 % 11 19 2034
50 % 11 19 2086
40 % 12 20 2009
30 % 12 20 2042
Entity #5 | Chains: L
F-actin capping protein beta subunit protein, length: 272 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 4 24823
95 % 1 4 24592
90 % 11 19 2017
70 % 11 19 2079
50 % 12 20 1979
40 % 12 20 2007
30 % 12 20 2047
Entity #6 | Chains: M
Dynactin Subunit 2 protein, length: 587 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #7 | Chains: N
Dynactin Subunit 2 protein, length: 616 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #8 | Chains: O,P
Dynactin Subunit 3 protein, length: 65 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #9 | Chains: Q,R
Dynactin Subunit 2 protein, length: 87 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures