Sequence Similarity Clusters for the Entities in PDB 6EWA

Entity #1 | Chains: A,E
HLA class I histocompatibility antigen, A-2 alpha chain protein, length: 276 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 159 229 53
95 % 206 285 63 Flexibility: Low
Max RMSD: 2.1, Avg RMSD: 0.9
PDBFlex
90 % 248 347 38
70 % 595 832 6
50 % 602 846 7
40 % 640 892 8
30 % 646 917 13
Entity #2 | Chains: B,F
Beta-2-microglobulin protein, length: 99 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 530 727 2
95 % 563 776 3 Flexibility: Low
Max RMSD: 22.2, Avg RMSD: 0.9
PDBFlex
90 % 575 794 4
70 % 756 1098 4
50 % 770 1122 3
40 % 770 1122 3
30 % 770 1122 9
Entity #3 | Chains: C,G
Polyprotein protein, length: 9 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #4 | Chains: D,H
LIR-1 protein, length: 195 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 4 9 5181
95 % 5 11 4675 Flexibility: Low
Max RMSD: 2.5, Avg RMSD: 1.5
PDBFlex
90 % 5 11 4747
70 % 8 15 3490
50 % 10 17 3335
40 % 13 21 2179
30 % 21 40 1195

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures