6EK0

High-resolution cryo-EM structure of the human 80S ribosome


Sequence Similarity Clusters for the Entities in PDB 6EK0

Entity #1 | Chains: L5
28S ribosomal RNA rna, length: 5070 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #10 | Chains: LG
60S ribosomal protein L7a protein, length: 266 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 15 25 2292
95 % 28 49 1328
90 % 28 49 1372
70 % 28 49 1392
50 % 102 156 329
40 % 102 158 337
30 % 102 158 352
Entity #11 | Chains: LH
60S ribosomal protein L9 protein, length: 192 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 16 34 1525
95 % 37 66 936
90 % 37 66 980
70 % 37 66 1006
50 % 103 178 264
40 % 104 179 272
30 % 172 251 200
Entity #12 | Chains: LI
60S ribosomal protein L10-like protein, length: 214 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 5 9 8784
95 % 6 17 4671
90 % 37 66 986
70 % 38 78 832
50 % 92 161 309
40 % 92 161 323
30 % 92 161 341
Entity #13 | Chains: LJ
60S ribosomal protein L11 protein, length: 178 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 37 59 810
95 % 38 67 899
90 % 38 67 938
70 % 100 171 255
50 % 102 175 265
40 % 102 175 281
30 % 102 175 302
Entity #14 | Chains: LL
60S ribosomal protein L13 protein, length: 211 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 15 25 2281
95 % 37 65 966
90 % 37 65 1009
70 % 37 65 1039
50 % 37 67 1035
40 % 106 168 305
30 % 106 168 325
Entity #15 | Chains: LM
60S ribosomal protein L14 protein, length: 215 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 4 14 4893
95 % 4 14 5833
90 % 4 14 5875
70 % 14 37 1866
50 % 14 37 1890
40 % 14 37 1955
30 % 14 37 1964
Entity #16 | Chains: LN
60S ribosomal protein L15 protein, length: 204 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 37 66 676
95 % 37 66 929
90 % 37 66 969
70 % 107 168 265
50 % 109 182 251
40 % 109 182 264
30 % 109 182 283
Entity #17 | Chains: LO
60S ribosomal protein L13a protein, length: 203 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 15 25 2233
95 % 37 66 911
90 % 37 66 977
70 % 37 66 1020
50 % 107 170 284
40 % 107 171 290
30 % 107 171 314
Entity #18 | Chains: LP
60S ribosomal protein L17 protein, length: 184 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 4 16 4027
95 % 14 34 1992
90 % 14 34 2005
70 % 14 34 2127
50 % 107 180 254
40 % 107 180 271
30 % 107 180 291
Entity #19 | Chains: LQ
60S ribosomal protein L18 protein, length: 188 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 15 25 2269
95 % 33 62 1019
90 % 37 66 972
70 % 37 67 986
50 % 106 171 292
40 % 106 176 287
30 % 106 176 311
Entity #2 | Chains: L7
5S ribosomal RNA rna, length: 120 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #20 | Chains: LR
60S ribosomal protein L19 protein, length: 196 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 33 62 736
95 % 37 66 920
90 % 37 66 961
70 % 37 67 992
50 % 99 169 289
40 % 99 170 299
30 % 99 170 321
Entity #21 | Chains: LS
60S ribosomal protein L18a protein, length: 176 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 15 25 2276
95 % 33 56 1149
90 % 33 56 1179
70 % 37 60 1140
50 % 105 161 318
40 % 106 162 322
30 % 106 163 335
Entity #22 | Chains: LT
60S ribosomal protein L21 protein, length: 160 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 37 65 704
95 % 37 66 930
90 % 37 66 970
70 % 37 67 998
50 % 100 160 319
40 % 100 166 316
30 % 102 173 309
Entity #23 | Chains: LU
60S ribosomal protein L22 protein, length: 128 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 4 14 4892
95 % 13 36 1838
90 % 13 36 1880
70 % 13 36 1926
50 % 13 37 1903
40 % 13 37 1951
30 % 13 37 1978
Entity #24 | Chains: LV
60S ribosomal protein L23 protein, length: 140 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 37 66 688
95 % 37 66 914
90 % 37 66 954
70 % 105 182 238
50 % 105 183 245
40 % 105 183 256
30 % 105 183 276
Entity #25 | Chains: LW
60S ribosomal protein L24 protein, length: 157 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 16 40 1237
95 % 16 40 1691
90 % 16 40 1713
70 % 16 40 1759
50 % 16 41 1731
40 % 58 105 489
30 % 58 105 517
Entity #26 | Chains: LX
60S ribosomal protein L23a protein, length: 156 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 4 20 3139
95 % 14 38 1770
90 % 14 38 1814
70 % 14 41 1680
50 % 14 42 1689
40 % 15 43 1574
30 % 15 43 1599
Entity #27 | Chains: LY
60S ribosomal protein L26 protein, length: 145 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 37 66 669
95 % 37 66 907
90 % 37 66 982
70 % 32 62 1083
50 % 107 180 253
40 % 107 180 268
30 % 107 180 289
Entity #28 | Chains: LZ
60S ribosomal protein L27 protein, length: 136 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 37 65 698
95 % 37 65 964
90 % 37 65 1008
70 % 37 65 1037
50 % 100 156 332
40 % 101 169 300
30 % 102 171 318
Entity #29 | Chains: La
60S ribosomal protein L27a protein, length: 148 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 15 25 2284
95 % 37 66 910
90 % 37 66 949
70 % 37 68 970
50 % 100 173 275
40 % 101 174 285
30 % 101 176 301
Entity #3 | Chains: L8
5.8S ribosomal RNA rna, length: 156 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #30 | Chains: Lb
60S ribosomal protein L29 protein, length: 159 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 4 13 5433
95 % 4 14 5895
90 % 4 14 5795
70 % 4 19 4217
50 % 4 19 4115
40 % 4 19 4057
30 % 4 19 3967
Entity #31 | Chains: Lc
60S ribosomal protein L30 protein, length: 115 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 5 21 2956
95 % 15 39 1722
90 % 15 39 1750
70 % 38 72 908
50 % 15 39 1820
40 % 15 43 1704
30 % 15 43 1725
Entity #32 | Chains: Ld
60S ribosomal protein L31 protein, length: 125 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 14 38 1324
95 % 14 38 1764
90 % 14 38 1802
70 % 14 39 1787
50 % 101 170 283
40 % 101 170 296
30 % 101 170 317
Entity #33 | Chains: Le
60S ribosomal protein L32 protein, length: 135 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 37 66 683
95 % 37 66 938
90 % 37 66 981
70 % 37 67 997
50 % 108 174 271
40 % 108 178 277
30 % 108 179 294
Entity #34 | Chains: Lf
60S ribosomal protein L35a protein, length: 110 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 16 33 1557
95 % 37 65 962
90 % 37 65 1005
70 % 37 65 1033
50 % 105 166 308
40 % 106 168 313
30 % 106 168 331
Entity #35 | Chains: Lg
60S ribosomal protein L34 protein, length: 117 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 37 65 695
95 % 37 65 952
90 % 37 65 997
70 % 37 65 1031
50 % 100 155 334
40 % 100 155 344
30 % 100 155 359
Entity #36 | Chains: Lh
60S ribosomal protein L35 protein, length: 123 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 15 26 2222
95 % 37 66 918
90 % 37 66 959
70 % 37 66 1007
50 % 106 172 286
40 % 107 183 255
30 % 108 185 269
Entity #37 | Chains: Li
60S ribosomal protein L36 protein, length: 105 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 16 33 1579
95 % 37 65 953
90 % 37 65 999
70 % 37 65 1032
50 % 37 67 1017
40 % 106 163 320
30 % 106 163 338
Entity #38 | Chains: Lj
60S ribosomal protein L37 protein, length: 97 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 14 33 1567
95 % 14 34 2028
90 % 14 34 2075
70 % 83 132 318
50 % 107 178 259
40 % 107 178 275
30 % 107 178 297
Entity #39 | Chains: Lk
60S ribosomal protein L38 protein, length: 70 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 33 61 751
95 % 37 65 956
90 % 37 65 1003
70 % 37 68 979
50 % 37 68 1009
40 % 37 68 1057
30 % 37 68 1099
Entity #4 | Chains: LA
60S ribosomal protein L8 protein, length: 257 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 37 66 672
95 % 37 66 913
90 % 37 66 952
70 % 98 159 276
50 % 99 172 276
40 % 167 243 198
30 % 167 243 207
Entity #40 | Chains: Ll
60S ribosomal protein L39 protein, length: 51 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 20 41 1211
95 % 37 66 944
90 % 37 66 988
70 % 98 162 269
50 % 99 174 269
40 % 99 176 279
30 % 100 177 298
Entity #41 | Chains: Lm
Ubiquitin-60S ribosomal protein L40 protein, length: 128 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 4 18 3755
95 % 4 18 4500
90 % 17 54 1130
70 % 17 57 1086
50 % 17 57 1125
40 % 17 57 1154
30 % 17 57 1194
Entity #42 | Chains: Ln
60S ribosomal protein L41 protein, length: 25 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 41 70 577
95 % 41 73 751
90 % 41 73 785
70 % 89 145 289
50 % 89 145 342
40 % 89 145 355
30 % 89 145 369
Entity #43 | Chains: Lo
60S ribosomal protein L36a protein, length: 106 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 37 66 693
95 % 37 66 943
90 % 37 66 987
70 % 97 157 281
50 % 99 169 287
40 % 98 169 298
30 % 99 170 319
Entity #44 | Chains: Lp
60S ribosomal protein L37a protein, length: 92 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 37 66 681
95 % 37 66 932
90 % 37 66 973
70 % 37 69 941
50 % 99 169 285
40 % 100 170 297
30 % 122 193 250
Entity #45 | Chains: Lr
60S ribosomal protein L28 protein, length: 137 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 15 25 2317
95 % 37 65 951
90 % 37 65 996
70 % 37 65 1027
50 % 37 65 1060
40 % 37 66 1085
30 % 37 68 1089
Entity #46 | Chains: Lz
60S ribosomal protein L10a protein, length: 217 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 20 26 2183
95 % 20 26 2819
90 % 20 26 2896
70 % 20 27 2827
50 % 26 58 1169
40 % 26 58 1206
30 % 26 58 1246
Entity #47 | Chains: S2
18S ribosomal RNA rna, length: 1869 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #48 | Chains: S6
Human initiator Met-tRNA-i rna, length: 75 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #49 | Chains: SA
40S ribosomal protein SA protein, length: 295 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 11 23 2016
95 % 25 48 1220
90 % 25 48 1255
70 % 25 48 1293
50 % 25 48 1315
40 % 25 48 1376
30 % 25 48 1403
Entity #5 | Chains: LB
60S ribosomal protein L3 protein, length: 403 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 15 25 2254
95 % 37 66 917
90 % 37 66 957
70 % 37 67 990
50 % 107 183 243
40 % 107 183 254
30 % 107 185 268
Entity #50 | Chains: SB
40S ribosomal protein S3a protein, length: 264 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 24 45 952
95 % 27 50 1173
90 % 27 50 1200
70 % 27 50 1224
50 % 83 136 359
40 % 85 143 350
30 % 85 143 365
Entity #51 | Chains: SD
40S ribosomal protein S3 protein, length: 243 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 20 38 1135
95 % 36 66 845
90 % 36 66 873
70 % 36 67 905
50 % 89 152 327
40 % 89 152 339
30 % 89 152 353
Entity #52 | Chains: SE
40S ribosomal protein S4, X isoform protein, length: 263 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 32 50 855
95 % 42 64 867
90 % 47 76 737
70 % 102 162 267
50 % 105 172 261
40 % 105 176 267
30 % 106 181 267
Entity #53 | Chains: SF
40S ribosomal protein S5 protein, length: 204 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 47 77 513
95 % 47 77 688
90 % 47 77 719
70 % 54 92 636
50 % 108 182 230
40 % 108 182 243
30 % 108 182 256
Entity #54 | Chains: SH
40S ribosomal protein S7 protein, length: 194 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 46 75 530
95 % 47 76 708
90 % 47 76 741
70 % 47 77 766
50 % 105 169 282
40 % 105 169 295
30 % 107 172 299
Entity #55 | Chains: SI
40S ribosomal protein S8 protein, length: 208 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 43 71 566
95 % 47 76 701
90 % 47 76 738
70 % 47 76 780
50 % 105 171 263
40 % 105 175 270
30 % 105 175 290
Entity #56 | Chains: SK
40S ribosomal protein S10 protein, length: 165 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 24 45 957
95 % 24 47 1265
90 % 24 47 1301
70 % 24 47 1334
50 % 24 48 1299
40 % 24 49 1354
30 % 24 49 1383
Entity #57 | Chains: SL
40S ribosomal protein S11 protein, length: 158 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 47 77 512
95 % 47 77 699
90 % 47 77 729
70 % 47 78 750
50 % 106 178 241
40 % 106 178 252
30 % 106 178 271
Entity #58 | Chains: SP
40S ribosomal protein S15 protein, length: 145 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 12 28 1596
95 % 27 51 1130
90 % 27 51 1175
70 % 27 53 1160
50 % 101 160 310
40 % 102 165 307
30 % 102 165 326
Entity #59 | Chains: SQ
40S ribosomal protein S16 protein, length: 146 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 39 69 587
95 % 39 69 797
90 % 39 69 839
70 % 39 72 840
50 % 100 173 256
40 % 100 177 258
30 % 101 178 272
Entity #6 | Chains: LC
60S ribosomal protein L4 protein, length: 427 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 4 15 4662
95 % 4 15 5350
90 % 8 28 2662
70 % 8 28 2612
50 % 8 29 2547
40 % 108 183 257
30 % 108 183 277
Entity #60 | Chains: SR
40S ribosomal protein S17 protein, length: 135 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 13 26 1712
95 % 47 76 711
90 % 47 76 740
70 % 47 77 764
50 % 101 157 312
40 % 101 157 326
30 % 101 157 344
Entity #61 | Chains: SS
40S ribosomal protein S18 protein, length: 152 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 47 77 503
95 % 47 77 689
90 % 47 77 720
70 % 105 164 260
50 % 108 173 255
40 % 108 178 253
30 % 108 178 273
Entity #62 | Chains: ST
40S ribosomal protein S19 protein, length: 145 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 23 40 1075
95 % 47 76 712
90 % 47 76 746
70 % 47 76 781
50 % 47 78 784
40 % 100 155 332
30 % 102 158 330
Entity #63 | Chains: SU
40S ribosomal protein S20 protein, length: 119 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 24 46 936
95 % 24 48 1216
90 % 24 48 1247
70 % 24 49 1266
50 % 24 51 1222
40 % 24 51 1265
30 % 24 51 1308
Entity #64 | Chains: SV
40S ribosomal protein S21 protein, length: 83 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 36 61 675
95 % 46 75 728
90 % 46 75 759
70 % 46 76 779
50 % 97 152 330
40 % 97 152 343
30 % 97 152 356
Entity #65 | Chains: SX
40S ribosomal protein S23 protein, length: 143 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 47 75 535
95 % 47 79 677
90 % 47 80 695
70 % 108 185 213
50 % 109 191 224
40 % 109 191 233
30 % 109 191 242
Entity #66 | Chains: Sa
40S ribosomal protein S26 protein, length: 115 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 10 31 1424
95 % 20 41 1434
90 % 20 41 1455
70 % 20 42 1468
50 % 26 68 887
40 % 28 70 859
30 % 28 70 888
Entity #67 | Chains: Sc
40S ribosomal protein S28 protein, length: 69 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 34 58 732
95 % 34 58 1010
90 % 34 58 1053
70 % 106 172 249
50 % 108 179 239
40 % 109 180 247
30 % 109 180 264
Entity #68 | Chains: Sd
40S ribosomal protein S29 protein, length: 56 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 44 70 574
95 % 44 74 734
90 % 44 74 765
70 % 95 149 284
50 % 96 158 311
40 % 96 158 325
30 % 96 158 343
Entity #69 | Chains: Sg
Receptor of activated protein C kinase 1 protein, length: 317 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 46 76 495
95 % 46 76 683
90 % 46 76 709
70 % 47 78 726
50 % 102 158 295
40 % 104 164 278
30 % 104 165 296
Entity #7 | Chains: LD
60S ribosomal protein L5 protein, length: 297 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 15 25 2262
95 % 37 66 922
90 % 37 66 968
70 % 37 66 1009
50 % 99 168 291
40 % 100 170 294
30 % 100 170 316
Entity #70 | Chains: SC
40S ribosomal protein S2 protein, length: 293 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 11 24 1859
95 % 15 36 1627
90 % 24 45 1336
70 % 25 47 1321
50 % 26 50 1257
40 % 26 50 1307
30 % 26 50 1342
Entity #71 | Chains: SG
40S ribosomal protein S6 protein, length: 249 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 47 75 529
95 % 47 76 704
90 % 47 76 733
70 % 51 82 712
50 % 103 163 305
40 % 103 168 301
30 % 103 168 323
Entity #72 | Chains: SJ
40S ribosomal protein S9 protein, length: 194 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 47 76 514
95 % 47 76 700
90 % 47 76 730
70 % 105 166 256
50 % 108 181 232
40 % 108 185 241
30 % 108 185 251
Entity #73 | Chains: SM
40S ribosomal protein S12 protein, length: 132 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 4 12 6557
95 % 40 69 789
90 % 40 69 827
70 % 45 74 805
50 % 45 75 825
40 % 45 75 863
30 % 45 75 895
Entity #74 | Chains: SN
40S ribosomal protein S13 protein, length: 151 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 47 76 518
95 % 47 76 714
90 % 47 76 743
70 % 106 171 252
50 % 108 178 242
40 % 109 183 242
30 % 109 183 255
Entity #75 | Chains: SO
40S ribosomal protein S14 protein, length: 151 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 43 65 628
95 % 43 65 856
90 % 49 73 778
70 % 108 179 230
50 % 108 180 238
40 % 108 180 250
30 % 108 180 266
Entity #76 | Chains: SW
40S ribosomal protein S15a protein, length: 130 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 47 77 509
95 % 47 77 694
90 % 47 77 725
70 % 107 182 234
50 % 109 184 229
40 % 110 189 236
30 % 516 741 23
Entity #77 | Chains: SY
40S ribosomal protein S24 protein, length: 133 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 43 71 564
95 % 47 76 716
90 % 47 76 745
70 % 47 77 771
50 % 103 173 272
40 % 103 173 284
30 % 103 173 307
Entity #78 | Chains: SZ
40S ribosomal protein S25 protein, length: 125 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 27 50 857
95 % 27 50 1181
90 % 27 50 1194
70 % 27 51 1201
50 % 27 51 1238
40 % 27 52 1260
30 % 27 52 1303
Entity #79 | Chains: Sb
40S ribosomal protein S27 protein, length: 84 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 47 76 521
95 % 47 76 706
90 % 47 76 736
70 % 99 156 274
50 % 102 168 273
40 % 102 168 286
30 % 102 168 310
Entity #8 | Chains: LE
60S ribosomal protein L6 protein, length: 288 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 4 12 6473
95 % 4 12 6680
90 % 4 13 6367
70 % 18 35 2007
50 % 18 35 2051
40 % 18 35 2109
30 % 18 35 2130
Entity #80 | Chains: Se
40S ribosomal protein S30 protein, length: 59 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 22 36 1366
95 % 22 36 1813
90 % 31 49 1360
70 % 31 51 1337
50 % 101 152 372
40 % 101 152 395
30 % 101 152 403
Entity #81 | Chains: Sf
Ubiquitin-40S ribosomal protein S27a protein, length: 156 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 22 42 1172
95 % 25 45 1321
90 % 25 45 1326
70 % 33 72 791
50 % 36 76 774
40 % 36 79 777
30 % 36 79 817
Entity #9 | Chains: LF
60S ribosomal protein L7 protein, length: 248 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 16 32 1626
95 % 37 66 906
90 % 37 66 966
70 % 37 66 1011
50 % 107 171 281
40 % 107 171 293
30 % 107 170 320

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures