Sequence Similarity Clusters for the Entities in PDB 6E4T

Entity #1 | Chains: A
5'-AMP-activated protein kinase catalytic subunit alpha-1 protein, length: 503 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 6 9 9644
95 % 10 14 5933 Flexibility: Medium
Max RMSD: 11.9, Avg RMSD: 3.1
PDBFlex
90 % 10 15 5657
70 % 15 23 2622
50 % 15 23 2670
40 % 15 23 2690
30 % 15 23 2649
Entity #2 | Chains: B
5'-AMP-activated protein kinase subunit beta-1 protein, length: 204 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 3 3 34193
95 % 10 13 6638 Flexibility: Low
Max RMSD: 1.3, Avg RMSD: 0.6
PDBFlex
90 % 10 13 6651
70 % 10 15 5703
50 % 10 15 5494
40 % 10 15 5351
30 % 10 15 5109
Entity #3 | Chains: C
5'-AMP-activated protein kinase subunit gamma-1 protein, length: 330 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 17 21 2977
95 % 26 34 1690 Flexibility: Low
Max RMSD: 2.3, Avg RMSD: 1.2
PDBFlex
90 % 26 34 1732
70 % 26 34 1766
50 % 26 34 1822
40 % 26 34 1863
30 % 36 44 1350

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures