Sequence Similarity Clusters for the Entities in PDB 6DP1

Entity #1 | Chains: A
Ribonuclease H protein, length: 142 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 22 52 878
95 % 24 87 509 Flexibility: No
Max RMSD: 1.5, Avg RMSD: 0.3
PDBFlex
90 % 24 87 533
70 % 24 87 563
50 % 24 87 592
40 % 24 87 624
30 % 24 87 662
Entity #2 | Chains: B
5'-R(*AP*CP*AP*U)-3' portion of uncleaved RNA 5'-R(*AP*CP*AP*UP*CP*G)-3' rna, length: 4 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #3 | Chains: b
5'-R(P*CP*G)-3' portion of uncleaved RNA 5'-R(*AP*CP*AP*UP*CP*G)-3' rna, length: 2 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #4 | Chains: C
DNA (5'-D(*CP*GP*AP*TP*GP*T)-3') dna, length: 6 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

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Rank PDB ID Entity ID Chains Description Details Taxonomy EC Number
1 6DOP 1 A Ribonuclease H Catalytic Domain 86665 3.1.26.4 | Details
2 6DMN 1 A Ribonuclease H 86665 3.1.26.4 | Details
3 6DOG 1 A Ribonuclease H Catalytic Domain 86665 3.1.26.4 | Details
4 6DP8 1 A Ribonuclease H Catalytic Domain 86665 3.1.26.4 | Details
5 6DPB 1 A Ribonuclease H 86665 3.1.26.4 | Details
6 6DOS 1 A Ribonuclease H catalytic domain (UNP residues 61-196) 86665 3.1.26.4 | Details
7 6DPC 1 A Ribonuclease H 86665 3.1.26.4 | Details
8 6DPI 1 A Ribonuclease H Catalytic Domain 86665 3.1.26.4 | Details
9 6DPH 1 A Ribonuclease H Catalytic Domain 86665 3.1.26.4 | Details
10 6DO9 1 A Ribonuclease H Catalytic Domain 86665 3.1.26.4 | Details
11 6DOK 1 A Ribonuclease H catalytic domain (UNP residues 61-196) 86665 3.1.26.4 | Details
12 6DOB 1 A Ribonuclease H Catalytic Domain 86665 3.1.26.4 | Details
13 6DPK 1 A Ribonuclease H Catalytic Domain 86665 3.1.26.4 | Details
14 6DP4 1 A Ribonuclease H Catalytic Domain residues 59-196 86665 3.1.26.4 | Details
15 6DOJ 1 A Ribonuclease H catalytic domain (UNP residues 61-196) 86665 3.1.26.4 | Details
16 6DPG 1 A Ribonuclease H Catalytic Domain 86665 3.1.26.4 | Details
17 6DOH 1 A Ribonuclease H Catalytic Domain 86665 3.1.26.4 | Details
18 6DP9 1 A Ribonuclease H 86665 3.1.26.4 | Details
19 6DOT 1 A Ribonuclease H Catalytic Domain 86665 3.1.26.4 | Details
20 6DO8 1 A Ribonuclease H Catalytic Domain 86665 3.1.26.4 | Details
21 6DP7 1 A Ribonuclease H 86665 3.1.26.4 | Details
22 6DOQ 1 A Ribonuclease H Catalytic Domain 86665 3.1.26.4 | Details
23 6DOM 1 A Ribonuclease H catalytic domain (UNP residues 61-196) 86665 3.1.26.4 | Details
24 6DP1 1 A Ribonuclease H Catalytic Domain residues 59-196 86665 3.1.26.4 | Details
25 6DP6 1 A Ribonuclease H Catalytic Domain residues 59-196 86665 3.1.26.4 | Details
26 6DOO 1 A Ribonuclease H catalytic domain (UNP residues 61-196) 86665 3.1.26.4 | Details
27 6DON 1 A Ribonuclease H catalytic domain (UNP residues 61-196) 86665 3.1.26.4 | Details
28 6DOL 1 A Ribonuclease H catalytic domain (UNP residues 61-196) 86665 3.1.26.4 | Details
29 6DP5 1 A Ribonuclease H Catalytic Domain residues 59-196 86665 3.1.26.4 | Details
30 6DOY 1 A Ribonuclease H Catalytic Domain 86665 3.1.26.4 | Details
31 6DPL 1 A Ribonuclease H Catalytic Domain 86665 3.1.26.4 | Details
32 6DPP 1 A Ribonuclease H Catalytic Domain 86665 3.1.26.4 | Details
33 6DOF 1 A Ribonuclease H Catalytic Domain 86665 3.1.26.4 | Details
34 6DOX 1 A Ribonuclease H Catalytic Domain 86665 3.1.26.4 | Details
35 6DPD 1 A Ribonuclease H 86665 3.1.26.4 | Details
36 6DPO 1 A Ribonuclease H Catalytic Domain 86665 3.1.26.4 | Details
37 6DOE 1 A Ribonuclease H Catalytic Domain 86665 3.1.26.4 | Details
38 6DOA 1 A Ribonuclease H Catalytic Domain 86665 3.1.26.4 | Details
39 6DOU 1 A Ribonuclease H Catalytic Domain 86665 3.1.26.4 | Details
40 6DPA 1 A Ribonuclease H 86665 3.1.26.4 | Details
41 6DP3 1 A Ribonuclease H Catalytic Domain residues 59-196 86665 3.1.26.4 | Details
42 6DOR 1 A Ribonuclease H catalytic domain (UNP residues 61-196) 86665 3.1.26.4 | Details
43 6DPN 1 A Ribonuclease H Catalytic Domain 86665 3.1.26.4 | Details
44 5SWM 1 A, B Ribonuclease H 86665 3.1.26.4 | Details
45 6DOW 1 A Ribonuclease H Catalytic Domain 86665 3.1.26.4 | Details
46 6DOV 1 A Ribonuclease H Catalytic Domain 86665 3.1.26.4 | Details
47 6DP0 1 A Ribonuclease H Catalytic Domain residues 61-195 86665 3.1.26.4 | Details
48 6DMV 1 A Ribonuclease H 86665 3.1.26.4 | Details
49 6DOD 1 A Ribonuclease H Catalytic Domain 86665 3.1.26.4 | Details
50 4OPJ 2 A, C Ribonuclease H UNP residues 59-196 86665 3.1.26.4 | Details
51 6DOZ 1 A Ribonuclease H Catalytic Domain residues 59-196 86665 3.1.26.4 | Details
52 6DOC 1 A Ribonuclease H Catalytic Domain 86665 3.1.26.4 | Details
53 1ZBF 1 A ribonuclease H-related protein catalytic domain (residues 59-196) 86665 3.1.26.4 | Details
54 6DPF 1 A Ribonuclease H 86665 3.1.26.4 | Details
55 6DPJ 1 A Ribonuclease H Catalytic Domain 86665 3.1.26.4 | Details
56 6DPE 1 A Ribonuclease H 86665 3.1.26.4 | Details
57 4HTU 1 A, B Ribonuclease H 86665 3.1.26.4 | Details
58 4OPK 1 A, C Ribonuclease H UNP residues 59-196 86665 3.1.26.4 | Details
59 4HUE 1 A, B Ribonuclease H 86665 3.1.26.4 | Details
60 6DP2 1 A Ribonuclease H Catalytic Domain residues 59-196 86665 3.1.26.4 | Details
61 6DPM 1 A Ribonuclease H Catalytic Domain 86665 3.1.26.4 | Details
62 2G8I 3 A Ribonuclease H Bh-RNase HC 86665 3.1.26.4 | Details
63 3EY1 1 A Ribonuclease H RNase H domain, UNP residues 59-196 86665 3.1.26.4 | Details
64 3ULD 1 A Ribonuclease H catalytic domain 86665 3.1.26.4 | Details
65 2G8F 3 A Ribonuclease H Bh-RNase HC 86665 3.1.26.4 | Details
66 2G8K 3 A Ribonuclease H Bh-RNase HC 86665 3.1.26.4 | Details
67 3I8D 1 A, C Ribonuclease H RNase-H 86665 3.1.26.4 | Details
68 4HUG 1 A, B Ribonuclease H 86665 3.1.26.4 | Details
69 5USG 3 A Ribonuclease H residues 59-196 86665 3.1.26.4 | Details
70 5WJR 3 A Ribonuclease H residues 59-196 86665 3.1.26.4 | Details
71 5W7O 3 A Ribonuclease H residues 62-193 86665 3.1.26.4 | Details
72 5USE 3 A Ribonuclease H residues 59-196 86665 3.1.26.4 | Details
73 3TWH 1 A Ribonuclease H catalytic domain 86665 3.1.26.4 | Details
74 2R7Y 3 A Ribonuclease H 86665 3.1.26.4 | Details
75 5USA 3 A Ribonuclease H residues 59-196 86665 3.1.26.4 | Details
76 4HUF 1 A, B Ribonuclease H 86665 3.1.26.4 | Details
77 6DOI 1 A Ribonuclease H Catalytic Domain 86665 3.1.26.4 | Details
78 5W7N 3 A Ribonuclease H residues 62-193 86665 3.1.26.4 | Details
79 5VAJ 3 A, B Ribonuclease H 86665 3.1.26.4 | Details
80 2G8V 3 A Ribonuclease H Bh-RNase HC 86665 3.1.26.4 | Details
81 3D0P 1 A, C Ribonuclease H 272558 3.1.26.4 | Details
82 2G8H 3 A Ribonuclease H Bh-RNase HC 86665 3.1.26.4 | Details
83 1ZBI 3 A, B ribonuclease H-related protein catalytic domain (residues 59-196) 86665 3.1.26.4 | Details
84 5US2 3 A Ribonuclease H residues 59-196 86665 3.1.26.4 | Details
85 2G8W 3 A Ribonuclease H Bh-RNase HC 86665 3.1.26.4 | Details
86 1ZBL 3 A, B ribonuclease H-related protein catalytic domain (residues 59-196) 86665 3.1.26.4 | Details
87 2G8U 3 A Ribonuclease H Bh-RNase HC 86665 3.1.26.4 | Details