Sequence Similarity Clusters for the Entities in PDB 6DP1

Entity #1 | Chains: A
Ribonuclease H protein, length: 142 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 22 52 841
95 % 24 87 511 Flexibility: No
Max RMSD: 1.5, Avg RMSD: 0.3
PDBFlex
90 % 24 87 532
70 % 24 87 565
50 % 24 87 593
40 % 24 87 630
30 % 24 87 668
Entity #2 | Chains: B
5'-R(*AP*CP*AP*U)-3' portion of uncleaved RNA 5'-R(*AP*CP*AP*UP*CP*G)-3' rna, length: 4 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #3 | Chains: b
5'-R(P*CP*G)-3' portion of uncleaved RNA 5'-R(*AP*CP*AP*UP*CP*G)-3' rna, length: 2 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #4 | Chains: C
DNA (5'-D(*CP*GP*AP*TP*GP*T)-3') dna, length: 6 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures