Sequence Similarity Clusters for the Entities in PDB 6DFJ

Entity #1 | Chains: H
anti-Zika antibody Z021, Heavy Chain protein, length: 230 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 2 38341
95 % 1 2 32489 Flexibility: Low
Max RMSD: 1.2, Avg RMSD: 1.2
PDBFlex
90 % 1 2 31140
70 % 700 2928 1
50 % 748 3079 1
40 % 748 3079 1
30 % 1474 6153 1
Entity #2 | Chains: L
anti-Zika antibody Z021, Light Chain protein, length: 216 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 2 38342
95 % 1 2 30618 Flexibility: Low
Max RMSD: 1.2, Avg RMSD: 1.2
PDBFlex
90 % 57 236 78
70 % 562 2391 2
50 % 714 3030 2
40 % 714 3030 2
30 % 1475 6153 1
Entity #3 | Chains: E
Dengue 1 Envelope DIII domain protein, length: 99 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 5 12887
95 % 3 9 7655 Flexibility: Low
Max RMSD: 1.5, Avg RMSD: 1.0
PDBFlex
90 % 3 9 7631
70 % 2 4 15480
50 % 7 29 1386
40 % 11 43 1036
30 % 13 48 992

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures