Sequence Similarity Clusters for the Entities in PDB 6DB6

Entity #1 | Chains: H
Human monoclonal anti-HIV-1 gp120 V3 antibody 311-11D Fab heavy chain protein, length: 230 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 82414
95 % 1 1 54522
90 % 1 1 54512
70 % 486 2943 1
50 % 516 3094 1
40 % 516 3094 1
30 % 1018 6183 1
Entity #2 | Chains: L
Human monoclonal anti-HIV-1 gp120 V3 antibody 311-11D Fab light chain protein, length: 214 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 62531
95 % 1 1 57798
90 % 10 56 604
70 % 94 609 7
50 % 495 3045 2
40 % 495 3045 2
30 % 1019 6183 1
Entity #3 | Chains: P
HIV-1 gp120 V3 peptide from MN strain protein, length: 23 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 9 5358
95 % 3 9 6203
90 % 3 9 6237
70 % 5 21 2419
50 % 5 21 2475
40 % 5 21 2505
30 % 5 21 2481

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures