Sequence Similarity Clusters for the Entities in PDB 6D6Q

Entity #1 | Chains: A
Exosome complex component RRP45 protein, length: 473 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 2 43143
95 % 2 3 26257
90 % 2 3 25374
70 % 2 3 24071
50 % 2 3 21163
40 % 2 3 19382
30 % 2 3 17370
Entity #10 | Chains: J
Exosome component 10 protein, length: 761 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 2 39447
95 % 1 2 42091
90 % 1 2 40053
70 % 1 2 35493
50 % 1 2 24098
40 % 1 2 21985
30 % 1 2 19626
Entity #11 | Chains: K
Exosome complex exonuclease RRP44 protein, length: 960 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 2 39448
95 % 2 3 29364
90 % 2 3 27071
70 % 2 3 25578
50 % 2 3 20120
40 % 9 12 6082
30 % 9 12 6237
Entity #12 | Chains: L
M-phase phosphoprotein 6 protein, length: 162 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 2 39449
95 % 2 3 25917
90 % 2 3 25064
70 % 2 3 22839
50 % 2 3 20121
40 % 2 3 18421
30 % 2 3 16534
Entity #13 | Chains: M
Exosome RNA helicase MTR4 protein, length: 1045 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 3 31882
95 % 4 5 13411
90 % 4 5 14099
70 % 4 5 13323
50 % 12 15 4220
40 % 12 15 4141
30 % 13 16 3867
Entity #14 | Chains: N
RNA (5'-R(*AP*GP*CP*AP*CP*CP*GP*UP*AP*AP*AP*GP*AP*CP*GP*C)-3') rna, length: 16 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #15 | Chains: O
DNA/RNA (62-MER) hybrid, length: 62 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #2 | Chains: B
Exosome complex component RRP41 protein, length: 249 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 3 35171
95 % 3 4 21727
90 % 3 4 23774
70 % 3 4 19408
50 % 3 4 19099
40 % 3 4 15889
30 % 12 15 4073
Entity #3 | Chains: C
Exosome complex component RRP43 protein, length: 278 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 4 21824
95 % 3 4 18863
90 % 3 4 18462
70 % 3 4 17138
50 % 3 4 15416
40 % 3 4 14308
30 % 22 23 900
Entity #4 | Chains: D
Exosome complex component RRP46 protein, length: 237 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 4 21998
95 % 3 4 21041
90 % 3 4 20495
70 % 3 4 18892
50 % 3 4 16792
40 % 3 4 15515
30 % 22 23 903
Entity #5 | Chains: E
Exosome complex component RRP42 protein, length: 293 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 3 32790
95 % 3 4 21728
90 % 3 4 21101
70 % 3 4 17137
50 % 3 4 15415
40 % 3 4 14307
30 % 3 4 13000
Entity #6 | Chains: F
Exosome complex component MTR3 protein, length: 272 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 4 23638
95 % 3 4 21039
90 % 3 4 20493
70 % 3 4 18890
50 % 3 4 16790
40 % 3 4 15513
30 % 3 4 14019
Entity #7 | Chains: G
Exosome complex component RRP40 protein, length: 277 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 2 44694
95 % 3 4 21040
90 % 3 4 20494
70 % 3 4 18891
50 % 3 4 16791
40 % 3 4 15514
30 % 3 4 14020
Entity #8 | Chains: H
Exosome complex component RRP4 protein, length: 296 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 4 22951
95 % 3 4 24420
90 % 3 4 23612
70 % 3 4 17136
50 % 3 4 15414
40 % 3 4 14306
30 % 3 4 12999
Entity #9 | Chains: I
Exosome complex component CSL4 protein, length: 197 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 3 32787
95 % 3 4 18862
90 % 3 4 18460
70 % 3 4 17135
50 % 3 4 15413
40 % 3 4 14305
30 % 3 4 12998

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures