Sequence Similarity Clusters for the Entities in PDB 6D6I

Entity #1 | Chains: A,D
Ubiquitin-conjugating enzyme E2 variant 1 protein, length: 143 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 44460
95 % 1 2 14579 Flexibility: Low
Max RMSD: 0.8, Avg RMSD: 0.6
PDBFlex
90 % 9 14 1858
70 % 10 16 1786
50 % 13 19 1682
40 % 13 19 1734
30 % 13 19 1756
Entity #2 | Chains: B,E
Ubiquitin-conjugating enzyme E2 N protein, length: 155 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 11 16 1177
95 % 19 29 896 Flexibility: Low
Max RMSD: 2.2, Avg RMSD: 1.0
PDBFlex
90 % 19 29 923
70 % 19 29 974
50 % 26 36 863
40 % 87 112 348
30 % 142 176 208
Entity #3 | Chains: C,F
Ubv.V1.1 protein, length: 88 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 58055
95 % 1 1 39664 Flexibility: No
Max RMSD: 0.1, Avg RMSD: 0.1
PDBFlex
90 % 2 2 26044
70 % 346 554 9
50 % 352 575 10
40 % 352 579 12
30 % 363 596 18

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures


ACTION - (A) Select for download / view details OR (B) Select two chains for comparison
Rank PDB ID Entity ID Chains Description Details Taxonomy EC Number
1 6D6I 3 C, F Ubv.V1.1 9606