Sequence Similarity Clusters for the Entities in PDB 6D6I

Entity #1 | Chains: A,D
Ubiquitin-conjugating enzyme E2 variant 1 protein, length: 143 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 44460
95 % 1 2 14579 Flexibility: Low
Max RMSD: 0.8, Avg RMSD: 0.6
PDBFlex
90 % 9 14 1858
70 % 10 16 1786
50 % 13 19 1682
40 % 13 19 1734
30 % 13 19 1756
Entity #2 | Chains: B,E
Ubiquitin-conjugating enzyme E2 N protein, length: 155 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 11 16 1177
95 % 19 29 896 Flexibility: Low
Max RMSD: 2.2, Avg RMSD: 1.0
PDBFlex
90 % 19 29 923
70 % 19 29 974
50 % 26 36 863
40 % 87 112 348
30 % 142 176 208
Entity #3 | Chains: C,F
Ubv.V1.1 protein, length: 88 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 58055
95 % 1 1 39664 Flexibility: No
Max RMSD: 0.1, Avg RMSD: 0.1
PDBFlex
90 % 2 2 26044
70 % 346 554 9
50 % 352 575 10
40 % 352 579 12
30 % 363 596 18

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures


ACTION - (A) Select for download / view details OR (B) Select two chains for comparison
Rank PDB ID Entity ID Chains Description Details Taxonomy EC Number
1 1Z2U 1 A Ubiquitin-conjugating enzyme E2 2 6239 6.3.2.19 | Details
2 4ONM 2 B Ubiquitin-conjugating enzyme E2 N 9606 2.3.2.23 | Details
3 4ONL 2 B Ubiquitin-conjugating enzyme E2 N 9606 2.3.2.23 | Details
4 2ESK 1 A Ubiquitin-conjugating enzyme E2 D2 9606 2.3.2.23 | Details
5 5LBN 1 A Ubiquitin-conjugating enzyme E2 E1 9606 2.3.2.23 | Details
6 2ESQ 1 A Ubiquitin-conjugating enzyme E2 D2 9606 2.3.2.23 | Details
7 5YWR 1 A Ubiquitin-conjugating enzyme E2 N 9606 2.3.2.23 | Details
8 2ESO 1 A Ubiquitin-conjugating enzyme E2 D2 9606 2.3.2.23 | Details
9 5V0R 1 A Ubiquitin-conjugating enzyme 5763
10 4ONN 2 B Ubiquitin-conjugating enzyme E2 N 9606 2.3.2.23 | Details
11 2ESP 1 A Ubiquitin-conjugating enzyme E2 D2 9606 2.3.2.23 | Details
12 4V3L 1 A UBIQUITIN-CONJUGATING ENZYME E2 D2 K85 SIDE CHAIN IS COVALENTLY LINKED TO G76 IN CHAIN B. RESIDUES 2-147 9606 2.3.2.23 | Details
13 4GPR 1 A Ubiquitin-conjugating enzyme family protein 5759
14 5D1M 1 A Ubiquitin-conjugating enzyme E2 D2 9606 2.3.2.23 | Details
15 5D1L 1 A Ubiquitin-conjugating enzyme E2 D2 9606 2.3.2.23 | Details
16 3L1Y 1 A Ubiquitin-conjugating enzyme E2 D2 residues 1-147 9606 2.3.2.23 | Details
17 1JAT 1 A Ubiquitin-Conjugating Enzyme E2-17.5 KDA 4932 2.3.2.23 | Details
18 3BZH 1 A Ubiquitin-conjugating enzyme E2 E1 9606 2.3.2.23 | Details
19 6HPR 3 C Ubiquitin-conjugating enzyme E2 D2 UbcH5B residues 1-147. Cys85 is mutated to Lys and forms isopeptide linkage with ubiquitin's Gly76 in chain D. 9606 2.3.2.23 | Details
20 5D1K 1 A Ubiquitin-conjugating enzyme E2 D2 9606 2.3.2.23 | Details
21 2BEP 1 A UBIQUITIN-CONJUGATING ENZYME E2-25 KDA CONSERVED CORE DOMAIN, RESIDUES 1-155 9913 2.3.2.23 | Details
22 3TGD 1 A Ubiquitin-conjugating enzyme E2 D2 9606 2.3.2.23 | Details
23 4DHI 2 D Ubiquitin-conjugating enzyme E2 N 9606 2.3.2.23 | Details
24 4NR3 2 B Ubiquitin-conjugating enzyme E2 N 9606 2.3.2.23 | Details
25 5OJJ 1 A, B, C, D, E, F Ubiquitin-conjugating enzyme E2 T 9606 2.3.2.23 | Details
26 5EGG 1 A Ubiquitin-conjugating enzyme E2 D3 9606 2.3.2.23 | Details
27 6MJ9 1 A Ubiquitin-conjugating enzyme 5763
28 1Y6L 1 A, B, C Ubiquitin-conjugating enzyme E2E2 Residues 55-201 9606 6.3.2.19 | Details
29 2R0J 1 A Ubiquitin carrier protein Residues 3-150 5833 6.3.2 | Details
30 5D0M 1 A Ubiquitin-conjugating enzyme E2 D2 9606 2.3.2.23 | Details
31 4QPL 2 B, D Ubiquitin-conjugating enzyme E2 D1 9606 2.3.2.23 | Details
32 5OJW 1 A Ubiquitin-conjugating enzyme E2 13 4932 2.3.2.23 | Details
33 1X23 1 A, B, C, D Ubiquitin-conjugating enzyme E2 D3 9606 2.3.2.23 | Details
34 4NRG 2 B Ubiquitin-conjugating enzyme E2 N 9606 2.3.2.23 | Details
35 4LDT 3 C Ubiquitin-conjugating enzyme E2 D2 9606 2.3.2.23 | Details
36 5ULF 1 A, C Ubiquitin-conjugating enzyme E2 D2 9606 2.3.2.23 | Details
37 1J7D 2 B UBIQUITIN-CONJUGATING ENZYME E2-17 KDA 9606 2.3.2.23 | Details
38 5ULH 1 A Ubiquitin-conjugating enzyme E2 D2 9606 2.3.2.23 | Details
39 1FZY 1 A, B UBIQUITIN-CONJUGATING ENZYME E2-24 KDA 4932 2.3.2.23 | Details
40 1JBB 1 A, B ubiquitin conjugating enzyme E2-17.5 KDA 4932 2.3.2.23 | Details
41 4V3K 1 A, D UBIQUITIN-CONJUGATING ENZYME E2 D2 LYS85 IN CHAINS A AND D IS COVALENTLY LINKED TO GLY76 IN CHAINS B AND E, RESPECTIVELY. RESIDUES 2-147 9606 2.3.2.23 | Details
42 4S3O 1 A, D Ubiquitin-conjugating enzyme E2 D3 9606 2.3.2.23 | Details
43 1YH2 1 A HSPC150 protein similar to ubiquitin-conjugating enzyme 9606 2.3.2.23 | Details
44 2CLW 1 A UBIQUITIN-CONJUGATING ENZYME E2 D2 RESIDUE A 85 HAS BEEN MODIFIED FROM CYSTEINE BY 2-MERCAPTOETHANOL TO FORM S, S-(2-HYDROXYETHYL) THIOCYSTEINE 9606 2.3.2.23 | Details
45 2CLW 2 B, C, D UBIQUITIN-CONJUGATING ENZYME E2 D2 9606 2.3.2.23 | Details
46 2YHO 2 B, D, F, H UBIQUITIN-CONJUGATING ENZYME E2 D1 9606 2.3.2.23 | Details
47 4A49 2 B Ubiquitin-conjugating enzyme E2 D2 9606 2.3.2.23 | Details
48 3ZNI 3 C, G, K, O UBIQUITIN-CONJUGATING ENZYME E2 D2 K85 SIDECHAIN IN CHIANS C, G, K AND O FORMS AN ISOPEPTIDE LINKAGE WITH THE CARBONYL CARBON OF G76 IN CHAINS D, H, L AND P, RESPECTIVELY. RESIDUES 2-147 9606 2.3.2.23 | Details
49 2AYV 1 A ubiquitin-conjugating enzyme E2 5811 6.3.2.19 | Details
50 5MNJ 1 A, E Ubiquitin-conjugating enzyme E2 D2 K85 in Chains A and E form isopeptide linkage with the carbonyl carbon of G76 in Chains B and F, respectively. 9606 2.3.2.23 | Details
51 3HCT 2 B Ubiquitin-conjugating enzyme E2 N 9606 2.3.2.23 | Details
52 5IFR 1 A Ubiquitin-conjugating enzyme E2 D3 9606 2.3.2.23 | Details
53 6D4P 1 A Ubiquitin-conjugating enzyme E2 D1 9606 2.3.2.23 | Details
54 4AUQ 1 A, D UBIQUITIN-CONJUGATING ENZYME E2 D2 UBCH5B, RESIDUES 1-147 9606 2.3.2.23 | Details
55 4TKP 1 A Ubiquitin-conjugating enzyme E2 N 9606 2.3.2.23 | Details
56 4NRI 2 B Ubiquitin-conjugating enzyme E2 N 9606 2.3.2.23 | Details
57 4AP4 2 B, E UBIQUITIN-CONJUGATING ENZYME E2 D1 ISOPEPTIDE AMIDE LINKAGE OF C85K ON UBCH5A TO G76 OF UBIQUITIN CHAIN B LINKED TO CHAIN C (UBIQUITIN) CHAIN E LINKED TO CHAIN F (UBIQUITIN) 9606 2.3.2.23 | Details
58 4II2 3 C Ubiquitin-conjugating enzyme E2 4 4896 6.3.2.19 | Details
59 5AIU 2 B, E UBIQUITIN-CONJUGATING ENZYME E2 N CHAIN B COVALENTLY LINKED TO CHAINS C, CHAIN E IS COVALENTLY LINKED TO CHAIN F 9606 2.3.2.23 | Details
60 5VZW 1 A, B Ubiquitin-conjugating enzyme E2 D2 9606 2.3.2.23 | Details
61 5EYA 1 A, B Ubiquitin-conjugating enzyme E2 N 9606 2.3.2.23 | Details
62 3A33 1 A Ubiquitin-conjugating enzyme E2 D2 9606 2.3.2.23 | Details
63 2BF8 1 A UBIQUITIN-CONJUGATING ENZYME E2-25 KDA COVALENT ISOPEPTIDE LINK BETWEEN E2-25K LYSINE 14 AND SUMO C-TERMINUS CONSERVED CORE DOMAIN, RESIDUES 1-154 9913 2.3.2.23 | Details
64 4DHJ 4 C, G, K, N Ubiquitin-conjugating enzyme E2 N 9606 2.3.2.23 | Details
65 4IP3 2 B Ubiquitin-conjugating enzyme E2 N 9606 2.3.2.23 | Details
66 3UGB 1 A Ubiquitin-conjugating enzyme E2 D3 unp residues 1-147 9606 2.3.2.23 | Details
67 5ULK 1 A Ubiquitin-conjugating enzyme E2 D2 9606 2.3.2.23 | Details
68 4WZ3 1 A Ubiquitin-conjugating enzyme E2 D2 9606 2.3.2.23 | Details
69 5FER 2 B, E Ubiquitin-conjugating enzyme E2 D1 9606 2.3.2.23 | Details
70 6JKY 2 B, E Ubiquitin-conjugating enzyme E2 N 9606 2.3.2.23 | Details
71 2C4P 1 A, B UBIQUITIN-CONJUGATING ENZYME E2 D1 9606 2.3.2.23 | Details
72 5D0K 1 A, D, G, J Ubiquitin-conjugating enzyme E2 D2 9606 2.3.2.23 | Details
73 5TUT 1 A Ubiquitin-conjugating enzyme E2 D1 9606 2.3.2.23 | Details
74 4A4B 3 C UBIQUITIN-CONJUGATING ENZYME E2 D2 9606 2.3.2.23 | Details
75 4A4C 3 C UBIQUITIN-CONJUGATING ENZYME E2 D2 9606 2.3.2.23 | Details
76 4FH1 1 A Ubiquitin-conjugating enzyme E2 13 4932 2.3.2.23 | Details
77 2GMI 1 A Ubiquitin-conjugating enzyme E2 13 4932 2.3.2.23 | Details
78 3RPG 1 A Ubiquitin-conjugating enzyme E2 D3 9606 2.3.2.23 | Details
79 3PTF 1 A, B Ubiquitin-conjugating enzyme E2 D1 E2 9606 2.3.2.23 | Details
80 3E95 1 A, B Ubiquitin carrier protein 5833 6.3.2 | Details
81 6S53 1 C, E, I, K Ubiquitin-conjugating enzyme E2 N 9606 2.3.2.23 | Details
82 6CP0 2 B Ubiquitin-conjugating enzyme E2 D3 9606 2.3.2.23 | Details
83 4X57 1 A, C Ubiquitin-conjugating enzyme E2 8 3702 6.3.2.19 | Details
84 5AIE 2 B UBIQUITIN-CONJUGATING ENZYME E2 4 4932 2.3.2.23 | Details
85 1QCQ 1 A PROTEIN (UBIQUITIN CONJUGATING ENZYME) 4932 2.3.2.23 | Details
86 3HCU 2 B, D Ubiquitin-conjugating enzyme E2 N Ubc13 9606 2.3.2.23 | Details
87 6D6I 2 B, E Ubiquitin-conjugating enzyme E2 N 9606 2.3.2.23 | Details
88 2C2V 1 B, E, H, K Ubiquitin-conjugating enzyme E2 N 9606 2.3.2.23 | Details
89 4BVU 2 B UBIQUITIN-CONJUGATING ENZYME E2 D3 OXYESTER LINK BETWEEN S85 AND UBIQUITIN G76 9606 2.3.2.23 | Details
90 2OXQ 1 A, B Ubiquitin-conjugating enzyme E2D 1 UbcH5 7955 6.3.2.19 | Details
91 6FGA 2 I, J, K, L, M, N, O Ubiquitin-conjugating enzyme E2 E1 9606 2.3.2.23 | Details
92 5ZBU 1 B, C Ubiquitin-conjugating enzyme E2 D2 9606 2.3.2.23 | Details
93 3W31 2 B Ubiquitin-conjugating enzyme E2 N 9606 2.3.2.23 | Details
94 3VON 3 C, E, G, J, L, N, Q, S, U, X, Z, b, e, g, i, l, n, p Ubiquitin-conjugating enzyme E2 N UNP residues 3-150 9606 2.3.2.23 | Details
95 3JVZ 1 A, B Ubiquitin-conjugating enzyme E2 D2 9606 2.3.2.23 | Details
96 4DHZ 4 F Ubiquitin-conjugating enzyme E2 N 9606 2.3.2.23 | Details
97 5AIT 2 B, E UBIQUITIN-CONJUGATING ENZYME E2 N 9606 2.3.2.23 | Details
98 3L1Z 1 A Ubiquitin-conjugating enzyme E2 D3 9606 2.3.2.23 | Details
99 3JW0 1 A, B Ubiquitin-conjugating enzyme E2 D2 9606 2.3.2.23 | Details
100 5VNZ 2 B, E Ubiquitin-conjugating enzyme E2 N 9606 2.3.2.23 | Details
101 5H7S 3 A, C Ubiquitin-conjugating enzyme E2 N 9606 2.3.2.23 | Details
102 5EDV 2 C, D, I Ubiquitin-conjugating enzyme E2 D2 9606 2.3.2.23 | Details
103 3EB6 2 B Ubiquitin-conjugating enzyme E2 D2 8355 6.3.2.19 | Details
104 3OJ4 1 A, D Ubiquitin-conjugating enzyme E2 D1 Ubiquitin-conjugating enzyme E2 D1 9606 2.3.2.23 | Details
105 5VO0 2 B, E Ubiquitin-conjugating enzyme E2 N 9606 2.3.2.23 | Details
106 4ORH 2 B, F, J Ubiquitin-conjugating enzyme E2 N 9606 2.3.2.23 | Details
107 4WHV 1 B, E, H, K Ubiquitin-conjugating enzyme E2 N unp residues 1-152 9606 2.3.2.23 | Details
108 6TTU 6 D Ubiquitin-conjugating enzyme E2 D2 UBE2D2 contains mutations of the following: Cys21Ile, Cys107Ala, Cys111Asp. 9606 2.3.2.23 | Details
109 2FUH 1 A Ubiquitin-conjugating enzyme E2 D3 UbcH5c 9606 2.3.2.23 | Details
110 1W4U 1 A UBIQUITIN-CONJUGATING ENZYME E2-17 KDA 2 9606 2.3.2.23 | Details
111 1UR6 1 A UBIQUITIN-CONJUGATING ENZYME E2-17 KDA 2 9606 2.3.2.23 | Details
112 1FXT 1 A UBIQUITIN-CONJUGATING ENZYME E2-24 KDA 4932 2.3.2.23 | Details