Sequence Similarity Clusters for the Entities in PDB 6D6I

Entity #1 | Chains: A,D
Ubiquitin-conjugating enzyme E2 variant 1 protein, length: 143 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 44321
95 % 1 2 16046 Flexibility: Low
Max RMSD: 0.8, Avg RMSD: 0.6
PDBFlex
90 % 9 14 1834
70 % 10 16 1784
50 % 13 19 1671
40 % 13 19 1740
30 % 13 19 1755
Entity #2 | Chains: B,E
Ubiquitin-conjugating enzyme E2 N protein, length: 155 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 44319
95 % 19 29 885 Flexibility: Low
Max RMSD: 2.2, Avg RMSD: 1.0
PDBFlex
90 % 19 29 914
70 % 19 29 962
50 % 26 36 861
40 % 87 112 345
30 % 142 176 205
Entity #3 | Chains: C,F
Ubv.V1.1 protein, length: 88 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 57911
95 % 1 1 39577 Flexibility: No
Max RMSD: 0.1, Avg RMSD: 0.1
PDBFlex
90 % 2 2 28045
70 % 351 558 9
50 % 352 574 10
40 % 352 578 12
30 % 363 595 19

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures


ACTION - (A) Select for download / view details OR (B) Select two chains for comparison
Rank PDB ID Entity ID Chains Description Details Taxonomy EC Number
1 4ONM 1 A Ubiquitin-conjugating enzyme E2 variant 2 9606
2 4ONL 1 A Ubiquitin-conjugating enzyme E2 variant 2 9606
3 4ONN 1 A Ubiquitin-conjugating enzyme E2 variant 2 9606
4 1JAT 2 B Ubiquitin-Conjugating Enzyme Variant Mms2 4932
5 2A4D 1 A Ubiquitin-conjugating enzyme E2 variant 1 catalytic domain, residues 82-220 9606 6.3.2.19 | Details
6 4NR3 1 A Ubiquitin-conjugating enzyme E2 variant 2 9606
7 5OJW 2 B Ubiquitin-conjugating enzyme variant MMS2 4932
8 4NRG 1 A Ubiquitin-conjugating enzyme E2 variant 2 9606
9 1J7D 1 A MMS2 9606
10 1J74 1 A MMS2 9606
11 4NRI 1 A Ubiquitin-conjugating enzyme E2 variant 2 9606
12 2GMI 2 B Ubiquitin-conjugating enzyme variant MMS2 4932
13 6D6I 1 A, D Ubiquitin-conjugating enzyme E2 variant 1 9606
14 2C2V 2 C, F, I, L Ubiquitin-conjugating enzyme E2 variant 1 9606
15 3VON 2 B, D, F, I, K, M, P, R, T, W, Y, a, d, f, h, k, m, o Ubiquitin-conjugating enzyme E2 variant 2 UNP residues 6-143 9606
16 5AIT 4 D, G UBIQUITIN-CONJUGATING ENZYME E2 VARIANT 2 UNP RESIDUES 1-145 9606
17 4ORH 1 A, E, I Ubiquitin-conjugating enzyme E2 variant 2 9606
18 2HLW 1 A Ubiquitin-conjugating enzyme E2 variant 1 9606
19 1ZGU 1 A Ubiquitin-conjugating enzyme E2 variant 2 9606