Sequence Similarity Clusters for the Entities in PDB 6D6I

Entity #1 | Chains: A,D
Ubiquitin-conjugating enzyme E2 variant 1 protein, length: 143 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 54895
95 % 1 2 15339 Flexibility: Low
Max RMSD: 0.8, Avg RMSD: 0.6
PDBFlex
90 % 9 14 1860
70 % 10 16 1807
50 % 13 19 1704
40 % 13 19 1760
30 % 13 19 1782
Entity #2 | Chains: B,E
Ubiquitin-conjugating enzyme E2 N protein, length: 155 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 44866
95 % 21 31 885 Flexibility: Low
Max RMSD: 2.2, Avg RMSD: 1.0
PDBFlex
90 % 21 31 919
70 % 21 31 954
50 % 28 38 862
40 % 89 114 348
30 % 144 178 210
Entity #3 | Chains: C,F
Ubv.V1.1 protein, length: 88 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 58502
95 % 1 1 43856 Flexibility: No
Max RMSD: 0.1, Avg RMSD: 0.1
PDBFlex
90 % 2 2 28310
70 % 357 571 9
50 % 358 587 10
40 % 358 591 12
30 % 370 612 18

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures


ACTION - (A) Select for download / view details OR (B) Select two chains for comparison
Rank PDB ID Entity ID Chains Description Details Taxonomy EC Number
1 6D6I 1 A, D Ubiquitin-conjugating enzyme E2 variant 1 9606