Sequence Similarity Clusters for the Entities in PDB 6D6I

Entity #1 | Chains: A,D
Ubiquitin-conjugating enzyme E2 variant 1 protein, length: 143 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 44078
95 % 1 2 15043 Flexibility: Low
Max RMSD: 0.8, Avg RMSD: 0.6
PDBFlex
90 % 9 14 1820
70 % 10 16 1766
50 % 13 19 1661
40 % 13 19 1714
30 % 13 19 1746
Entity #2 | Chains: B,E
Ubiquitin-conjugating enzyme E2 N protein, length: 155 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 57558
95 % 19 29 878 Flexibility: Low
Max RMSD: 2.2, Avg RMSD: 1.0
PDBFlex
90 % 19 29 907
70 % 19 29 962
50 % 26 36 857
40 % 87 111 342
30 % 142 175 204
Entity #3 | Chains: C,F
Ubv.V1.1 protein, length: 88 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 57559
95 % 1 1 39325 Flexibility: No
Max RMSD: 0.1, Avg RMSD: 0.1
PDBFlex
90 % 2 2 27898
70 % 351 555 9
50 % 352 570 10
40 % 352 574 12
30 % 363 591 20

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures